Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme181361g00001 ATGGAGGCTGAGACGAACAAATTGTTCTTCTTTGAAGGTTGTTCATATAGTTTTGACCTTGAAGATTTGTTGAAGGCTTCAGCTGAAGTACTTGGAAAAGGAAGCTATGGAACAACATATAAAGCTGNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTGGAAAGAAGGAGTTTGAGCAACAGATGGAGGTTGTTGGAAGAATTGGAAGACATTCCAATGTCATACCACTTAGAGCTTATTACTATTCAAAAAATGAGAAACTTCTTGTTTATGATTACATGCATGGAGGAAGCTTGTTTTCCTCACTTCATG 334 0.3144 MEAETNKLFFFEGCSYSFDLEDLLKASAEVLGKGSYGTTYKAXXXXXXXXXXXXXXXXXXGKKEFEQQMEVVGRIGRHSNVIPLRAYYYSKNEKLLVYDYMHGGSLFSSLH 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme181361g00001 111 ProSiteProfiles Protein kinase domain profile. 25 111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme181361g00001 111 Coils Coil 40 42 - -
Trme181361g00001 111 Gene3D Phosphorylase Kinase; domain 1 1 100 - -
Trme181361g00001 111 SUPERFAMILY Protein kinase-like (PK-like) 29 111 IPR011009 -
Trme181361g00001 111 PANTHER OS05G0588300 PROTEIN 5 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme181361g00001 Trme-Chr181361 88 421 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme181361g00001 2 111 Receptor kinase-like Gene Family AT3G08680 65.455 2.35e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme181361g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme181361g00001 - - gmx:100775340 166.777