Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme180951g00001 GCCTTGGATCCAAAATTTGTGCCCAAGGTAGAAGCAGGAACCTCCCAACCTGCCGAGGCGCCACGTGCTCGTCCGCTCACCAAAGAAGATTTTCAGATTGTTTTTGGGGTTGAAAGGTTCAGGTGCCCTGAAATTTTGTTCAGTCCAAACTGGATTGGTGTTGATCAAGTTGGATTAGATGAGATGGCCGGGGTGTCGATGAGAAGGTTATCATGTAAAGATGAAAGGCTTGAAGAGAGAATGACTAATTCAATACTTGTGACTGGTGGAAGTTCTCTTTTCCCCGGCATCATTGAACGCCTTGAAGCTGGAATTCGGATGAT 323 0.4644 ALDPKFVPKVEAGTSQPAEAPRARPLTKEDFQIVFGVERFRCPEILFSPNWIGVDQVGLDEMAGVSMRRLSCKDERLEERMTNSILVTGGSSLFPGIIERLEAGIRM 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme180951g00001 107 Gene3D - 27 107 - -
Trme180951g00001 107 MobiDBLite consensus disorder prediction 1 23 - -
Trme180951g00001 107 Pfam Actin 32 105 IPR004000 -
Trme180951g00001 107 FunFam Actin-related protein 5 27 56 - -
Trme180951g00001 107 SUPERFAMILY Actin-like ATPase domain 17 106 IPR043129 -
Trme180951g00001 107 PANTHER ACTIN 31 106 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme180951g00001 Trme-Chr180951 154 476 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme180951g00001 33 105 Cytoskeleton Gene Families AT5G09810 39.726 3.43e-12 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme180951g00001 K11672 - gmx:100808396 190.274