Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme180920g00001 ATGTTGGAATCTTGCTATGTGCAATATGGAGTGACATGCTTAATATGGCTTGGAACATCGTATGTGGCTACTGGTTCTAATGACGGAGTTGTTAGAATATGGGATAGTCGGTCTGGTGAATGTGTCAGAACATTCAGAGGGCACTCTGAAAACATTCAATCTCTTTCTTTGTCTGCTAATGGCGAGTACCTTGTCTCAGCTTCTATGGATCATACAGCTCGTGTTTTTGATGTTAAAGGATTTCGTTAA 249 0.4056 MLESCYVQYGVTCLIWLGTSYVATGSNDGVVRIWDSRSGECVRTFRGHSENIQSLSLSANGEYLVSASMDHTARVFDVKGFR 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme180920g00001 82 Gene3D - 7 82 IPR015943 GO:0005515
Trme180920g00001 82 ProSiteProfiles Trp-Asp (WD) repeats profile. 20 44 IPR001680 GO:0005515
Trme180920g00001 82 SMART WD40_4 38 77 IPR001680 GO:0005515
Trme180920g00001 82 SMART WD40_4 1 35 IPR001680 GO:0005515
Trme180920g00001 82 ProSitePatterns Trp-Asp (WD) repeats signature. 22 36 IPR019775 -
Trme180920g00001 82 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 9 79 - -
Trme180920g00001 82 ProSiteProfiles Trp-Asp (WD) repeats profile. 45 82 IPR001680 GO:0005515
Trme180920g00001 82 SUPERFAMILY WD40 repeat-like 10 79 IPR036322 GO:0005515
Trme180920g00001 82 Pfam WD domain, G-beta repeat 10 35 IPR001680 GO:0005515
Trme180920g00001 82 Pfam WD domain, G-beta repeat 39 77 IPR001680 GO:0005515
Trme180920g00001 82 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 45 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme180920g00001 Trme-Chr180920 73 435 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme180920g00001 22 82 U-box Gene Family AT2G33340 36.066 1.22e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme180920g00001 K24725 - cam:101500534 136.732