Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme180785g00001 CAAGTTGTTGCCGAGAAAGGACTTCGGGTGTTCACTTTCAAGCAGTTACATTCTGCCACCGGAGGATTCAGCAAGTCAAATGTGGTTGGTCATGGTGGATTTGGACTTGTTTACCGTGGAGTTCTCAATGATGGAAGGAAGGTTGCGGTTAAATTGATGGATCAGGCTGGAAAGCAAGGAGAAGAAGAGTTTAAAGTCGAGGTGGAATTGCTAAGTCGGTTGCATTCTCCATATTTGCTTGCATTGCTTGGATACTGCTCTGATCATAATCATAAGCTGCTGGTGTATGAATTTATGGCGAATGGTGGCCTTCAGGAACATCTTTATCCTATCAGCAATAACAGTAAGTAA 351 0.433 QVVAEKGLRVFTFKQLHSATGGFSKSNVVGHGGFGLVYRGVLNDGRKVAVKLMDQAGKQGEEEFKVEVELLSRLHSPYLLALLGYCSDHNHKLLVYEFMANGGLQEHLYPISNNSK 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme180785g00001 116 Gene3D Phosphorylase Kinase; domain 1 3 98 - -
Trme180785g00001 116 SUPERFAMILY Protein kinase-like (PK-like) 6 109 IPR011009 -
Trme180785g00001 116 ProSitePatterns Protein kinases ATP-binding region signature. 29 51 IPR017441 GO:0005524
Trme180785g00001 116 Pfam Protein tyrosine and serine/threonine kinase 26 108 IPR001245 GO:0004672|GO:0006468
Trme180785g00001 116 ProSiteProfiles Protein kinase domain profile. 23 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme180785g00001 116 PANTHER OS07G0668900 PROTEIN 8 113 - -
Trme180785g00001 116 FunFam Serine/threonine-protein kinase PBS1 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme180785g00001 Trme-Chr180785 1 468 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme180785g00001 1 109 Receptor kinase-like Gene Family AT3G58690 88.991 3.00e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Trme180785g00001 PK_Tyr_Ser-Thr 2.3e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme180785g00001 - - psat:127086543 228.409