Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme180719g00001 | ATGGGACGAGTCCGAACCAAAACCGTGAAGAAATCCTCTTGTCAAGTCATTGAGCGTTACTTCCCTAGAATGACACCCGATTTCCACACCAACAAGAAGATCGTCGAAGAAGTTGCTATGATACCATCAAAGCGTCTTCGTAACAAGATCGCTGGTTTCTCCACTCATCTCATGAAGCGTA | 181 | 0.453 | MGRVRTKTVKKSSCQVIERYFPRMTPDFHTNKKIVEEVAMIPSKRLRNKIAGFSTHLMKR | 60 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme180719g00001 | 60 | Pfam | Ribosomal S17 | 1 | 60 | IPR001210 | GO:0003735|GO:0005840|GO:0006412 | |
| Trme180719g00001 | 60 | PANTHER | 40S RIBOSOMAL PROTEIN S17 | 1 | 60 | IPR001210 | GO:0003735|GO:0005840|GO:0006412 | |
| Trme180719g00001 | 60 | Hamap | 30S ribosomal protein S17e [rps17e]. | 1 | 60 | IPR001210 | GO:0003735|GO:0005840|GO:0006412 | |
| Trme180719g00001 | 60 | ProSitePatterns | Ribosomal protein S17e signature. | 41 | 56 | IPR018273 | GO:0003735|GO:0005840|GO:0006412 | |
| Trme180719g00001 | 60 | FunFam | 40S ribosomal protein S17 | 1 | 60 | - | - | |
| Trme180719g00001 | 60 | SUPERFAMILY | Rps17e-like | 1 | 60 | IPR036401 | GO:0003735|GO:0005840|GO:0006412 | |
| Trme180719g00001 | 60 | Gene3D | - | 1 | 60 | IPR036401 | GO:0003735|GO:0005840|GO:0006412 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme180719g00001 | 1 | 60 | Cytoplasmic Ribosomal Protein Gene Family | AT3G10610 | 88.333 | 8.31e-34 | 110 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme180719g00001 | K02962 | - | twl:119991767 | 110.923 |