Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1805g00001 ATGACCACCTGTTCAATTTACGCTTCTAATTCTGACGAAAGTGTTGTCGAATTAGACCTTGAGTCGTGTACCAAGATCTTTGAAGTTAGTAGGAATTTCAGTGCAATGGATCTGAGGTCTAATCAACTGAGTTTGAGTTGGCCCATACCAAATTGTACGGTGTGTACCGCGAAAGGCAAGAAATGTAGATGGAACAACAACGCCACAAAAGGTGCTGACACTGAATGCTTTGTTTGCAAACGAAAAACAATTCAAATTCCAAAATCTGTTATTTTAGCTACTGCCGGTTCAATTATATTGGGGTTAGTCACCATTGCATTTATTAAGATTTATCTACATTTTAGAGAAAAAGAAGAAGATCGAGTTAGAATGGACAAGTTTTTAGAGGATTACAGAGCACAAAAGCCCGCTAGATTTTCCTATGCTGATATTAAAAGAATCACGGGTGGGTTTAAGGAAAAGTTGGGAGAAGGAGCTCATGGAACTGTATTTAAAGGAAAACTCTCTAGTGAGATTCTGGTGGCTGTGAAGATTCTCAACAATACACAAGGAGAAGGGAAAGAGTTCATCACTGAAGTGGAAATTATGGGCAAAATCCACCACATTAATGTGGTTCGTTTGCTTGGTTTCTGCGCAGATGGAATCCACCGTGCTCTTGTATACAATTTGTTTCAAAATGGTTCGCTACAGAGTTTTATATTTCCACCTGATAACAAAGACCACTTCATGGGGTGGGTGAAGCTGCAACAAATTGCTCTTGGCATAGCCAAAGGAATTGAGTATCTTCATGAGGGATGTAACCATCCAATCCTTCACTTTGACATCAACCCTCACAACGTTTTACTAGATGACACTTTCATTCCAAAAATTTCAGATTTTGGTCTCGCTAAAATATGCTCCAAGAATCTTAGTGTGGTGTCCATGACAGCTGCGAGGGGAACCTTAGGATATATGGCGCCTGAAGTTTTGTCCCGTAATTTTGGGAATGTTTCTCTTAAGTCTGATATTTACAGTTATGGGATGTTGTTATTAGAAATAGTTGGAGGAAGAAAGAACGTTGACTCATCGTCTACAGAAAATTTCAATGTTTTATATCCAGAATGGATCCATAACTTATTGGAAGGAGACATACATATTCATATTGAAGATGAAGGTGATGTTAAAATTGCAAAGAAACTTGCAATTGTCGGACTTTGGTGCATTCAATGGCAGCCAATGAACCGTCCTTCCATAAAAACCATCATACAAATGTTGGAAACAGAATATTACAACCAATTAACTATTCCACCTAATCCTTTTCATTCCACCACTTCCATTACCACTAGTGAAGGCTCTTTGGCAAGACAACCTTTCCAAATGGAAGTGATTCAGGAATAA 1377 0.3856 MTTCSIYASNSDESVVELDLESCTKIFEVSRNFSAMDLRSNQLSLSWPIPNCTVCTAKGKKCRWNNNATKGADTECFVCKRKTIQIPKSVILATAGSIILGLVTIAFIKIYLHFREKEEDRVRMDKFLEDYRAQKPARFSYADIKRITGGFKEKLGEGAHGTVFKGKLSSEILVAVKILNNTQGEGKEFITEVEIMGKIHHINVVRLLGFCADGIHRALVYNLFQNGSLQSFIFPPDNKDHFMGWVKLQQIALGIAKGIEYLHEGCNHPILHFDINPHNVLLDDTFIPKISDFGLAKICSKNLSVVSMTAARGTLGYMAPEVLSRNFGNVSLKSDIYSYGMLLLEIVGGRKNVDSSSTENFNVLYPEWIHNLLEGDIHIHIEDEGDVKIAKKLAIVGLWCIQWQPMNRPSIKTIIQMLETEYYNQLTIPPNPFHSTTSITTSEGSLARQPFQMEVIQE 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1805g00001 458 ProSitePatterns Protein kinases ATP-binding region signature. 155 177 IPR017441 GO:0005524
Trme1805g00001 458 Gene3D Transferase(Phosphotransferase) domain 1 224 427 - -
Trme1805g00001 458 Gene3D Phosphorylase Kinase; domain 1 123 223 - -
Trme1805g00001 458 Pfam Protein kinase domain 152 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1805g00001 458 ProSiteProfiles Protein kinase domain profile. 149 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1805g00001 458 PANTHER RUST RESISTANCE KINASE LR10-RELATED 123 437 IPR045874 GO:0004672
Trme1805g00001 458 SUPERFAMILY Protein kinase-like (PK-like) 132 419 IPR011009 -
Trme1805g00001 458 FunFam serine/threonine-protein kinase PBS1-like 116 223 - -
Trme1805g00001 458 FunFam PR5-like receptor kinase 224 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1805g00001 Trme-Chr1805 791 2167 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1805g00001 114 432 Receptor kinase-like Gene Family AT1G66980 47.256 5.59e-95 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme1805g00001 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1805g00001 - - gmx:102662104 703.745