Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18056g00001 AAGTTTAGATTCGGGACTCATGGTTGGGCTCGGGCTCGGGCTCATGACACGGTGGCAGATTTTGAGGCTCTTCTTGATCCACAACAATACACTAACATTTCAGATTACATGCCCAAAGAAACGGTGAAAACTATGCCTGAATGTGAACATTGTTTTCATGCACAATGCATCGATGAATGGCTTCCGCTGAATGCGTCGTGTCCAATTTGTCGAACTTCTCCTACATGTGTACCATCACAAAATCTAGCTCAATCTTGA 258 0.4419 KFRFGTHGWARARAHDTVADFEALLDPQQYTNISDYMPKETVKTMPECEHCFHAQCIDEWLPLNASCPICRTSPTCVPSQNLAQS 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18056g00001 85 ProSiteProfiles Zinc finger RING-type profile. 47 71 IPR001841 -
Trme18056g00001 85 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 33 74 IPR046948 -
Trme18056g00001 85 Pfam RING-H2 zinc finger domain 40 71 IPR024766 GO:0008270
Trme18056g00001 85 SUPERFAMILY RING/U-box 35 75 - -
Trme18056g00001 85 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 73 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18056g00001 Trme-Chr18056 53 412 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18056g00001 33 73 C3H Transcription Factor Family AT1G28040 65.854 4.88e-17 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18056g00001 - - vvo:131661310 138.272