Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme180441g00001 ATGTATGATGGCATCGAATATTTTCTATGCAGTGATAATAACATCATGCCTATAAGGTACTCTTACAAAGACATCAATAAGATAACCGAACAATTCAAGATAAAACTTGGTAACGGGGGTTATGGATCTGTTTTCAAAGGAAAGCTTCGAAGTGGCCGTCTTGTAGCAGTGAAGTTATTGGACAAAGCCAAGTCCAATGGTCAAGATTTTGTTAATGAAGTTGCTACTATAGGCAGGATTCACCATATTAACGTG 255 0.3725 MYDGIEYFLCSDNNIMPIRYSYKDINKITEQFKIKLGNGGYGSVFKGKLRSGRLVAVKLLDKAKSNGQDFVNEVATIGRIHHINV 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme180441g00001 85 ProSitePatterns Protein kinases ATP-binding region signature. 36 58 IPR017441 GO:0005524
Trme180441g00001 85 ProSiteProfiles Protein kinase domain profile. 30 85 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme180441g00001 85 Pfam Protein tyrosine and serine/threonine kinase 32 85 IPR001245 GO:0004672|GO:0006468
Trme180441g00001 85 Gene3D Phosphorylase Kinase; domain 1 10 85 - -
Trme180441g00001 85 PANTHER RUST RESISTANCE KINASE LR10-RELATED 5 85 IPR045874 GO:0004672
Trme180441g00001 85 SUPERFAMILY Protein kinase-like (PK-like) 14 85 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme180441g00001 Trme-Chr180441 178 432 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme180441g00001 12 85 Receptor kinase-like Gene Family AT5G38260 47.436 1.42e-19 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme180441g00001 PK_Tyr_Ser-Thr 5e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme180441g00001 - - psat:127093935 148.288