Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme180310g00001 ATGCAATTGTGTTGTCTTAATCTAAAGGTACGTTCTGCGGGCTTCTCGAATCCAACACCAATACAGGCTCAAACATGGCCCATTGCCCTACAGGGTAGAGACATAGTGGCTATTGCCAAAACAGGCTCTGGGAAAACACTAGGCTACTTAATGCCGGCCTTCATTCTTCTCAGGCAGAGACGCAATAATTCTCTGAATGGCCCCACTGTATTGGTTTTGGCTCCAACACGTGAACTTGCGACACAGATCCAAGAGGAGGTCTTCAAATTTGCACGGTCTTCAAGAGTATCTTGCACG 297 0.4714 MQLCCLNLKVRSAGFSNPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNSLNGPTVLVLAPTRELATQIQEEVFKFARSSRVSCT 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme180310g00001 99 Pfam DEAD/DEAH box helicase 19 93 IPR011545 GO:0003676|GO:0005524
Trme180310g00001 99 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 97 IPR027417 -
Trme180310g00001 99 Gene3D - 5 99 IPR027417 -
Trme180310g00001 99 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 11 98 - -
Trme180310g00001 99 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 26 99 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme180310g00001 Trme-Chr180310 10 361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme180310g00001 10 87 Eukaryotic Initiation Factors Gene Family AT3G19760 38.750 1.88e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme180310g00001 K12823 - gmx:100807830 168.703