Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme180277g00001 ATGGTCTCAAGTGGATCATGGGATAATAATTCAACTGCTGAGAACCATGAGATCATCAAAAGTAAACACAAGCTGACAATTAGATGGAAGAAAGAAGGAATTAATAATAATATTGAAGAAGTTGATCATCATGATGATGGTACTTCAGTGAAGTGGATGTCTTCAAAGATGAGAATGATGAGGAAGATGATAGATTCTGATCAAACTAGTGGTTCAAACATAGCAAGCAATTCAAAGCAAAAATTTGAAGATCAAAAGCAACCACTTTCACCACTAGGAAGCAGCACCAATAATTATTCAAATCAAATTAGGGTTTGTTCTGATTGCAACACCACTAAGACCCCTCTTTGGAGGAGTGGACCAAGAGGCCCCAAG 375 0.3733 MVSSGSWDNNSTAENHEIIKSKHKLTIRWKKEGINNNIEEVDHHDDGTSVKWMSSKMRMMRKMIDSDQTSGSNIASNSKQKFEDQKQPLSPLGSSTNNYSNQIRVCSDCNTTKTPLWRSGPRGPK 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme180277g00001 125 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 124 - -
Trme180277g00001 125 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 3 125 - -
Trme180277g00001 125 Pfam GATA zinc finger 106 125 IPR000679 GO:0006355|GO:0043565
Trme180277g00001 125 Gene3D - 101 125 IPR013088 GO:0006355|GO:0008270
Trme180277g00001 125 ProSiteProfiles GATA-type zinc finger domain profile. 100 125 IPR000679 GO:0006355|GO:0043565
Trme180277g00001 125 MobiDBLite consensus disorder prediction 65 105 - -
Trme180277g00001 125 MobiDBLite consensus disorder prediction 64 105 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme180277g00001 49 125 C2C2-Gata Transcription Factor Family AT4G26150 55.000 3.38e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trme180277g00001 GATA 1.6e-07 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme180277g00001 - - mtr:25494244 161.384