Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme180191g00001 TTCTGTCCACAGGATCGAAAGTATCCAAACGGGCATCGATTGAACAGAGCAACAACTCATGGATATTGGAAGGCAACGGGAAAGGATCGTAGAATCAAGTCTGGAAACATCTTGATTGGAATGAAGAAGACTCTAGTTTTCTACAGTGGTCGTGCACCTAAAGGGAAGAGGACTAATTGGGTTATGCATGAGTATCGTCCCACCCTGAAGGAGCTTGATGGTACCAATCCAGGACAGAATCCGTATGTCCTCTGTCGGTTATTTAAGAAAAACGACGAGAGCCTTGAAGTTTCAAACTGTGGTGAAGTGGAGCAAGCTACTTCCGCTCCTTTGACTGCCAATTACTCTCCTGAAGAAATACAATCTGATCCAGCTCCTATTACGGCA 387 0.4496 FCPQDRKYPNGHRLNRATTHGYWKATGKDRRIKSGNILIGMKKTLVFYSGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKNDESLEVSNCGEVEQATSAPLTANYSPEEIQSDPAPITA 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme180191g00001 129 Pfam No apical meristem (NAM) protein 1 66 IPR003441 GO:0003677|GO:0006355
Trme180191g00001 129 Gene3D NAC domain 1 95 IPR036093 GO:0003677|GO:0006355
Trme180191g00001 129 ProSiteProfiles NAC domain profile. 1 90 IPR003441 GO:0003677|GO:0006355
Trme180191g00001 129 MobiDBLite consensus disorder prediction 106 129 - -
Trme180191g00001 129 MobiDBLite consensus disorder prediction 106 123 - -
Trme180191g00001 129 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 102 - -
Trme180191g00001 129 SUPERFAMILY NAC domain 1 91 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme180191g00001 Trme-Chr180191 2 477 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme180191g00001 1 123 NAC Transcription Factor Family AT4G35580 69.106 2.48e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme180191g00001 NAM 1.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme180191g00001 - - vvo:131661222 261.922