Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1798g00001 ATGGGTCGTCGCAAAATTGAGATCGAGATAGTGAAAGACCCCAACACGAGGCAGGTCACATTCTCAAAGCGTCGAACAGGTTTATTCAAGAAAGCAAATGAATTGTCTATTTTGTGTGGAGCAGAAGTAGCTATTGTTGTGTTTTCTCCAGGGAACAAGCCTTACTCTTTTGGTCACCCAGGAGTTGATGTTGTTGCGGCCAAGTATCTTCAACAAGATCCTGAACCAAGTGACTCCCAAGGAGAGCCCTTTTCTGATGCTTCCAATATGGACAACTTGAATCTGGAACTTGCTGAGGTATTGGCTGAAATTCGTGAAGGTGAAAAGCAGGCTAAGACTTATGATGAGATCTTGAAACAAAATGATGTGACAACACTCTCCGAGCTTGAAGAATTGAGAGATTCATACAAAGGGCTTCAAGATTGGGTAAAATTGTGTCTTAGTGATATCGAGATATCAGAATATATGATGTTGCTTGCTAAGGAGCCGGTGGTAGGGGTTAAAGCAACAAAAAAGAATAGAAGAAGAAATTAA 534 0.412 MGRRKIEIEIVKDPNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPGVDVVAAKYLQQDPEPSDSQGEPFSDASNMDNLNLELAEVLAEIREGEKQAKTYDEILKQNDVTTLSELEELRDSYKGLQDWVKLCLSDIEISEYMMLLAKEPVVGVKATKKNRRRN 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1798g00001 177 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Trme1798g00001 177 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trme1798g00001 177 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trme1798g00001 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Trme1798g00001 177 PANTHER MADS BOX PROTEIN 3 140 - -
Trme1798g00001 177 Gene3D - 14 80 IPR036879 GO:0003677|GO:0046983
Trme1798g00001 177 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trme1798g00001 177 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trme1798g00001 177 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trme1798g00001 177 Coils Coil 90 110 - -
Trme1798g00001 177 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Trme1798g00001 177 CDD MADS_MEF2_like 2 71 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1798g00001 Trme-Chr1798 859 1392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1798g00001 1 161 Type I MADS-box Gene Family AT2G34440 43.429 2.23e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme1798g00001 SRF-TF 1.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1798g00001 - - mtr:11439559 251.136