Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17981g00001 CTTTCGAGACAGACAACCGATGAAAAACTCACGGAAGCATTTTCTCCTTTCGGGAAGCTAGTCGAAGCTAAGGTGATAATGGACAGACCCTCTGGAAGATCAAAGGGATTTGCTTTTGTATCGTATGCAACTGTAGAAGAAGCTGAGAAGGCAAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCGAAACCAAGAGAACCCAGACCTCCCCAGCAATCAGAATCTCAGCCGTCTCAAGCCGGTTTCACAGTTAATAAGACCGTTGGGTGGTGTGGTTGA 303 0.4488 LSRQTTDEKLTEAFSPFGKLVEAKVIMDRPSGRSKGFAFVSYATVEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQQSESQPSQAGFTVNKTVGWCG 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17981g00001 100 PANTHER NUCLEOLAR PROTEIN 8 1 99 - -
Trme17981g00001 100 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 72 IPR000504 GO:0003723
Trme17981g00001 100 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 62 IPR000504 GO:0003723
Trme17981g00001 100 SMART rrm1_1 1 68 IPR000504 GO:0003723
Trme17981g00001 100 Gene3D - 1 85 IPR012677 -
Trme17981g00001 100 SUPERFAMILY RNA-binding domain, RBD 1 92 IPR035979 GO:0003676
Trme17981g00001 100 MobiDBLite consensus disorder prediction 70 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17981g00001 Trme-Chr17981 311 723 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17981g00001 1 87 Eukaryotic Initiation Factors Gene Family AT3G16380 37.778 3.79e-12 58.9