Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme179794g00001 TTTGGTATTTACCTTTTCAGAAAAATCAAGAATGCTGATGTAATAGAAGCATGGGAGCTTGAAATTGGGCCACATCGATACTCCTATCAAGAACTCAAGAAAGCTACAAAAGGTTTCAAGGAGAAAGAGCTACTTGGACAGGGTGGTTTCGGAAGAGTTTACAATGGGACTTTGCCGAAATCAAAGATCCAAGTAGCTGTTAAGAGAGTTTCGCATGAATCAAAACAAGGGCTGCGGGAATTTGTGTCCGAGATCTCAAGCTTAGGACGCCTTTGCCACCGGAATTTGGTTCAGTTACTCGGTTGGTGTCGCCGCAGAGGCGACCTCTTACTTGTGTATGACTTCATGGCTAATGGAAGCTTAGACAAGTACTTGTTTGAAGATTCAGATATTGTGCTAAGTTGGGAACAAAGGTTTAAGATAATAAAGGATGTTGCTTCAG 442 0.4208 FGIYLFRKIKNADVIEAWELEIGPHRYSYQELKKATKGFKEKELLGQGGFGRVYNGTLPKSKIQVAVKRVSHESKQGLREFVSEISSLGRLCHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFEDSDIVLSWEQRFKIIKDVAS 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme179794g00001 147 ProSitePatterns Protein kinases ATP-binding region signature. 45 68 IPR017441 GO:0005524
Trme179794g00001 147 SUPERFAMILY Protein kinase-like (PK-like) 24 147 IPR011009 -
Trme179794g00001 147 Pfam Protein tyrosine and serine/threonine kinase 41 146 IPR001245 GO:0004672|GO:0006468
Trme179794g00001 147 PANTHER - 15 147 - -
Trme179794g00001 147 ProSiteProfiles Protein kinase domain profile. 39 147 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme179794g00001 147 FunFam Lectin-domain containing receptor kinase A4.3 24 115 - -
Trme179794g00001 147 Gene3D Phosphorylase Kinase; domain 1 24 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme179794g00001 Trme-Chr179794 37 478 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme179794g00001 3 147 Receptor kinase-like Gene Family AT3G55550 69.178 1.85e-68 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trme179794g00001 PK_Tyr_Ser-Thr 8.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme179794g00001 - - gmx:100784346 267.314