Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17973g00001 TGGCAAAGCAGGTATGGAGAGGCAAGCACTGCCTTAACTGACAGAGCTAGTAAACTACGTCAAGCGGCAGCTCTTATAGAATGCAATTTAAATCTACTTGGAGCAACCGGAATCGAGGACAAGCTGCAAGAGGGTGTACCAGAAGCCATTGAGTCCCTACGGCAAGCTGGAATCAAGGTCTGGGTTCTTACTGGTGATAAACAAGAGACTGCGATTTCAATTGGTCTTTCCTGCAAGCTTCTCAGTGCAGATATGCAGCAAATTGTTATAAATGGCACTTCAGAGGAAGAATGCAGAAATCTTTTGGGTGATGCAATAGCTAAATATGGTGTGAGATCTTCAAGTAGAGGGCATCAGAATCTGAAGAATAAAACAAATGCTGAACATGGTGATCTTGATATTTCCAATGGTTCAAAGTCAATGAGTTTGCCCAAGTGGAATCCAGGAAAGGAAGAAGGAACTAATACTCCATTGGCACTCATAATTGACGGGAACAGTTTGGTTTATATTTTGGAGAAGGAACTGGAGTCAGAGCTTTTTGACCTCGCAACTTCCTGTAAGGTTGTGCTGTGTTGTCGTGTTGCACCCTTGCAGAAGGCTGGAATTGTTGATCTGATAAAGAGCCGCACAGATGATATGACACTAGCCATAGGGGCCAATGATGTGTCAATGATTCAAATGGCAGATGTTGGTGTTGGAATATGCGGGCAGGAAGGACGTCAAGCAGTGATGGCATCAGATTTTGCTATGGGACAATTTCAGTTCTTGAAAAGATTACTTCTTGTTCACGGGCACTGGAATTACCAGCGTGTTGGTTATTTAGTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTGTTGATGTTATTTTG 872 0.4312 WQSRYGEASTALTDRASKLRQAAALIECNLNLLGATGIEDKLQEGVPEAIESLRQAGIKVWVLTGDKQETAISIGLSCKLLSADMQQIVINGTSEEECRNLLGDAIAKYGVRSSSRGHQNLKNKTNAEHGDLDISNGSKSMSLPKWNPGKEEGTNTPLALIIDGNSLVYILEKELESELFDLATSCKVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFQFLKRLLLVHGHWNYQRVGYLVLYNFYRNAVFVLMLF 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17973g00001 290 NCBIfam HAD-IC family P-type ATPase 30 81 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme17973g00001 290 NCBIfam HAD-IC family P-type ATPase 187 290 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme17973g00001 290 SUPERFAMILY HAD-like 24 263 IPR036412 -
Trme17973g00001 290 Gene3D - 30 255 IPR023214 -
Trme17973g00001 290 MobiDBLite consensus disorder prediction 116 143 - -
Trme17973g00001 290 Pfam Phospholipid-translocating P-type ATPase C-terminal 243 290 IPR032630 -
Trme17973g00001 290 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 290 - -
Trme17973g00001 290 Pfam haloacid dehalogenase-like hydrolase 21 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17973g00001 Trme-Chr17973 173 1415 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17973g00001 1 290 Primary Pumps ATPases AT5G04930 60.616 9.54e-107 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17973g00001 K14802 - gmx:100789830 520.39