Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme179552g00001 TATATTCAAACAACAAAAGTTAGTGAAAAGATTGATGTCTACAGCTTTGGTGTTATCCTATTGGAACTGACAACTGGTAAAGAAGCTAACTATGGTGATGAGCATTCATCACTTGCAGAGTGGTCTTGGCGCCACATTCGAGCAGGAAGCAATATAGAAGAGTTGCTTGACAAAGAAGTAATGGAACCAATTCACTTAGATGGAATGTGCAAAGTTTTCAAACTTGGTGTGATGTGTACTTCAACACTTCCATCTAGTAGACCTTCCATGAAAGAGGAATTCTAA 285 0.3825 YIQTTKVSEKIDVYSFGVILLELTTGKEANYGDEHSSLAEWSWRHIRAGSNIEELLDKEVMEPIHLDGMCKVFKLGVMCTSTLPSSRPSMKEEF 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme179552g00001 94 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 92 - -
Trme179552g00001 94 Gene3D Transferase(Phosphotransferase) domain 1 1 94 - -
Trme179552g00001 94 SUPERFAMILY Protein kinase-like (PK-like) 2 92 IPR011009 -
Trme179552g00001 94 Pfam Protein tyrosine and serine/threonine kinase 2 92 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme179552g00001 Trme-Chr179552 98 471 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme179552g00001 1 92 Receptor kinase-like Gene Family AT5G25930 59.783 1.06e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme179552g00001 PK_Tyr_Ser-Thr 2.4e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme179552g00001 - - cam:101515509 174.866