Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme179148g00001 ATTCCTCAAGTTTCTCATCTTGGTTGGGGTCATTGGTATACTCTTAGAGAATTAGAAGATGCTACTAATGCATTTGCTCCTGAGAATGTTATTGGTGAAGGTGGTTATGGAATTGTTTATCATGGTATTTTGAAGGATAATACTAATATTGCAATTAAGAATTTGCTTAATAATAGAGGACAAGCTGAAAGAGAATTCAAGGTTGAAGTGGAAGCTATCGGAAGAGTTCGACATAAGAATTTAGTAAGGTTGCTTGGTTATTGTGCTGAAGGAGCTCATAGGTAG 285 0.3579 IPQVSHLGWGHWYTLRELEDATNAFAPENVIGEGGYGIVYHGILKDNTNIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCAEGAHR 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme179148g00001 94 FunFam Probable serine/threonine-protein kinase At1g01540 5 94 - -
Trme179148g00001 94 ProSiteProfiles Protein kinase domain profile. 25 94 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme179148g00001 94 Coils Coil 45 65 - -
Trme179148g00001 94 ProSitePatterns Protein kinases ATP-binding region signature. 31 53 IPR017441 GO:0005524
Trme179148g00001 94 Pfam Protein tyrosine and serine/threonine kinase 29 91 IPR001245 GO:0004672|GO:0006468
Trme179148g00001 94 SUPERFAMILY Protein kinase-like (PK-like) 9 93 IPR011009 -
Trme179148g00001 94 Gene3D Phosphorylase Kinase; domain 1 7 94 - -
Trme179148g00001 94 PANTHER OS01G0323000 PROTEIN 2 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme179148g00001 Trme-Chr179148 1 385 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme179148g00001 12 94 Trihelix Transcription Factor Family AT5G38560 48.193 3.86e-24 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trme179148g00001 PK_Tyr_Ser-Thr 3.6e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme179148g00001 - - vvo:131634354 197.208