Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17906g00001 GATGTTGTGGCTACTGGTGGGAAGTGCATGCTCTTAAGATGGGTAACAGAGGACACCATAAAGGCTTTGAAAGAGAAGGAGAAAGAACCCTTAGCTCCTGAGCCAGAACCCGAGCCAACTACTGAAGTACTTTTCCTTTGCAGCTACGAAGGCTGTGGAAAGACATTTATAGATGCTGGTGCTTTGAGGAAGCATTCTCACATTCACGGAGAGAGGCAATTTGTTTGTCATTACGAGGGGTGTGGAAAGGTAATGAATCTGTTCTTCAGATTCACGCACTCACAAGTCCACATATGCATGTTAAACTGTATGGTTGTAAGTTGTAACATACTAGGTTCATTGTAA 345 0.4348 DVVATGGKCMLLRWVTEDTIKALKEKEKEPLAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKVMNLFFRFTHSQVHICMLNCMVVSCNILGSL 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17906g00001 114 ProSitePatterns Zinc finger C2H2 type domain signature. 47 69 IPR013087 -
Trme17906g00001 114 SUPERFAMILY beta-beta-alpha zinc fingers 46 70 IPR036236 -
Trme17906g00001 114 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 7 83 - -
Trme17906g00001 114 SMART c2h2final6 74 97 IPR013087 -
Trme17906g00001 114 SMART c2h2final6 45 69 IPR013087 -
Trme17906g00001 114 Gene3D Classic Zinc Finger 45 70 - -
Trme17906g00001 114 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 74 IPR013087 -
Trme17906g00001 114 FunFam zinc finger transcription factor YY1 45 70 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17906g00001 16 83 C2H2 Transcription Factor Family AT4G06634 80.882 2.47e-25 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme17906g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17906g00001 - - qsa:O6P43_012184 142.895