Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme178706g00001 ATGTCGAGCGGAAGAAAAACCCGAGGTCGCCAAAAGGTTGAGATGAAAAAGATTAGCGATGAGACCAACCTACAAGTAAGTTTCTCGAAGCGTCGTAGCGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTTTGTGGTGCAGAAGTTGCTCTCATTGTTTTCTCTCCTGGTGGGAAGGTATTTTCCTTTGGTCACCCCAATGTTGATGCGGTCATAGATCGTTATNNNNNNNNNNANNNNNNNNNNANNGATGGTGTCATGCGATTCATTGAGGCTTATCGCAGCGCCAATGTGTGTCAGCTCAATACTCAGCTGACTCATATCAACAATATGTTGGACAACGAGAAGAGGCGTCATGATGAGCTGAATCATATTCGCAAGATGACTGAGGATCATTGTTGGTGGGCTTGTCCCATTGATGGGATGAATTGGGATCAACTTGACTTATTCAAAAACGCATTGGAGGACCTTAAGA 478 0.431 MSSGRKTRGRQKVEMKKISDETNLQVSFSKRRSGLFKKASELCTLCGAEVALIVFSPGGKVFSFGHPNVDAVIDRYXXXXXXXXDGVMRFIEAYRSANVCQLNTQLTHINNMLDNEKRRHDELNHIRKMTEDHCWWACPIDGMNWDQLDLFKNALEDLK 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme178706g00001 159 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Trme178706g00001 159 CDD MADS_MEF2_like 9 76 IPR033896 GO:0000977|GO:0045944
Trme178706g00001 159 Gene3D - 20 84 IPR036879 GO:0003677|GO:0046983
Trme178706g00001 159 FunFam Agamous-like MADS-box protein AGL62 20 85 - -
Trme178706g00001 159 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Trme178706g00001 159 Gene3D - 87 159 - -
Trme178706g00001 159 PANTHER MADS BOX PROTEIN 10 158 - -
Trme178706g00001 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Trme178706g00001 159 SUPERFAMILY SRF-like 9 79 IPR036879 GO:0003677|GO:0046983
Trme178706g00001 159 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Trme178706g00001 159 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Trme178706g00001 159 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme178706g00001 Trme-Chr178706 3 480 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme178706g00001 5 159 Type I MADS-box Gene Family AT5G60440 53.797 9.47e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme178706g00001 SRF-TF 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme178706g00001 - - mtr:11438274 225.328