Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme178515g00001 ATGGAGGGAGTTTTAGTAGAGACTGAGAACATGTTAGCTCGTGGTAGAATGGACCTACCAGTTAGTCTATGCTTTGCAGCAGCAAGAGGAGATGATTTATTGATACATCAATTGTTGAAAAGGGGTTTGGATCCAAATGAATCTGACAACAATGGAAGAACAGCTTTGCATATAGCAGCATGTAAAGGAAAAGAAAACTGTGTTTTACTTCTGTTAGATTATGGGGCAAATCCGAATATTAGAG 244 0.3852 MEGVLVETENMLARGRMDLPVSLCFAAARGDDLLIHQLLKRGLDPNESDNNGRTALHIAACKGKENCVLLLLDYGANPNIR 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme178515g00001 81 Gene3D - 6 81 IPR036770 -
Trme178515g00001 81 ProSiteProfiles Ankyrin repeat region circular profile. 51 81 - -
Trme178515g00001 81 SUPERFAMILY Ankyrin repeat 23 80 IPR036770 -
Trme178515g00001 81 SMART ANK_2a 51 80 IPR002110 GO:0005515
Trme178515g00001 81 SMART ANK_2a 18 47 IPR002110 GO:0005515
Trme178515g00001 81 ProSiteProfiles Ankyrin repeat profile. 51 81 IPR002110 GO:0005515
Trme178515g00001 81 Pfam Ankyrin repeats (3 copies) 23 81 IPR002110 GO:0005515
Trme178515g00001 81 PANTHER POTASSIUM CHANNEL AKT1 4 80 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme178515g00001 Trme-Chr178515 116 449 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme178515g00001 1 81 Ion Channels AT4G32500 75.309 3.10e-40 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme178515g00001 K21867 - qsa:O6P43_002328 155.221