Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17848g00001 ATGGTTGGAATGGGACAAAAAGATGCATATGTAGGTGATGAAGCACAATCGAAGAGAGGTATATTGACATTGAAATATCCAATTGAGCATGGAATTGTTAGTAATTGGGATGATATGGAGAAGATCTGGCATCATACTTTCTACAATGAACTTCGTGTTGCTCCTGAAGAACATCCTGTTCTTCTTACTGAAGCACCTCTTAATCCTAAGGCTAATCGTGAGAAAATGACTCAGATCATGTTTGAGACATTCAATACTCCTGCTATGTATGTTGCTATTCAAGCTGTGCTTTCTCTTTACGCTAGTGGCCGTACAACTGGTATTGTTCTTGATTCTGGGGATGGTGTTAGTCACACGGTTCCCATCTATGAGGGTTATGCACTTCCACATGCAATCCTTCGTTTGGATCTTGCAGGCCGCGATCTAACCGATGCGTTGATGAAGATTTTAACNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGAAATTGTGAGGGATGTGAAGGAGAAATTGGCTTATATTGCTATTGATTATGAGCAGGAGTTGGAAACTGCCAAGACTAGCTCAGCTGTTGAGAAGACCTATGAGTTACCTGACGGGCAGGTGATCACGATCGGTGCTGAAAGGTTCCGATGCCCTGAAGTTTTGTTCCAGCCATCCATGATAGGGATGGAATCTCCTGGTATCCATGAGACGACGTTTAACTCGATCATGAAGTGTGACGTTGACATTAGGAAGGATCTCTATGGTAACATTGTCTTGAGTGGTGGTTCGACAATGTTCCCTGGTATTGCTGATAGGATGAGTAAGGAGATTACCGCATTGGCACCTAGTAGCATGAAAATCAAGGTTGTAGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGTTCCATTTTGGCATCCCTCAGCACTTTCCAACAG 933 0.418 MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTXXXXXXXXXXXXEIVRDVKEKLAYIAIDYEQELETAKTSSAVEKTYELPDGQVITIGAERFRCPEVLFQPSMIGMESPGIHETTFNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17848g00001 311 ProSitePatterns Actins and actin-related proteins signature. 61 73 IPR020902 -
Trme17848g00001 311 Gene3D - 95 295 - -
Trme17848g00001 311 PRINTS Actin signature 6 17 IPR004000 -
Trme17848g00001 311 PRINTS Actin signature 18 40 IPR004000 -
Trme17848g00001 311 PRINTS Actin signature 72 85 IPR004000 -
Trme17848g00001 311 PRINTS Actin signature 97 116 IPR004000 -
Trme17848g00001 311 PRINTS Actin signature 193 209 IPR004000 -
Trme17848g00001 311 SMART actin_3 1 311 IPR004000 -
Trme17848g00001 311 ProSitePatterns Actins signature 1. 10 20 IPR004001 -
Trme17848g00001 311 Pfam Actin 7 311 IPR004000 -
Trme17848g00001 311 FunFam Major actin 215 295 - -
Trme17848g00001 311 SUPERFAMILY Actin-like ATPase domain 1 110 IPR043129 -
Trme17848g00001 311 FunFam Actin, alpha skeletal muscle 137 228 - -
Trme17848g00001 311 Coils Coil 164 172 - -
Trme17848g00001 311 CDD NBD_sugar-kinase_HSP70_actin 31 138 - -
Trme17848g00001 311 PANTHER ACTIN 8 309 IPR004000 -
Trme17848g00001 311 SUPERFAMILY Actin-like ATPase domain 104 311 IPR043129 -
Trme17848g00001 311 Gene3D - 2 311 - -
Trme17848g00001 311 FunFam Actin, alpha skeletal muscle 1 131 - -
Trme17848g00001 311 Gene3D Actin; Chain A, domain 4 137 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17848g00001 Trme-Chr17848 12 1386 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17848g00001 1 311 Cytoskeleton Gene Families AT5G09810 92.605 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17848g00001 K10355 - gmx:100777705 587.415