Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme178332g00001 ATGATATTTGAAAATATCATCGAAGCTACCAATAACTTTGATGATGATTATCTCATTGGAGTGGGAGGGGAAGGGTCTGTTTACAAGGCTGAATTGTCTGCAGATATGGTTGTTGCAGTGAAGAAACTTCATTCACGAATAGATGGGGAGATGCCCAATTTCAAATCTTTTGAAAATGAAATTAAAGCTTTGACAGAAATCAAGCATCGTAACATCATAAAGCTTTATGGATATTGCCAACATTCAAGATTCTCATTTTTGGTTTATAAGTTCTTGGAAGGGGGAACATTGGCAAAAATCCTAAACAATGACTCACACGTCGTTGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTAGAGGTGTGGCTAATGCTTTGTCCTATA 385 0.3688 MIFENIIEATNNFDDDYLIGVGGEGSVYKAELSADMVVAVKKLHSRIDGEMPNFKSFENEIKALTEIKHRNIIKLYGYCQHSRFSFLVYKFLEGGTLAKILNNDSHVVAFDWEKRVNVVRGVANALSY 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme178332g00001 128 SUPERFAMILY Protein kinase-like (PK-like) 4 128 IPR011009 -
Trme178332g00001 128 PANTHER LEUCINE RICH REPEAT KINASE 2 2 128 - -
Trme178332g00001 128 Pfam Protein kinase domain 16 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme178332g00001 128 ProSiteProfiles Protein kinase domain profile. 13 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme178332g00001 128 FunFam Leucine-rich repeat receptor protein kinase MSP1 1 91 - -
Trme178332g00001 128 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme178332g00001 Trme-Chr178332 1 385 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme178332g00001 3 128 Receptor kinase-like Gene Family AT4G08850 52.713 1.17e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme178332g00001 Pkinase 6.2e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme178332g00001 - - gmx:100814634 204.912