Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme178320g00001 ATGGTCTTCGGCGATGCCTTCGGAGTTTTCCAAAACTGCAAACTAACCATAAGAAAACCACTAGAAGAACAAAAATGTAACGTAGCYGCCAACGGAAGAACCAAAGCCGATAGCGCAAGTGGTTTTGTTTTCCAAAGTTGTAAATTCACAGGTGAACCAGAAGTAGCCAAGATTGATCCCAAAATATCATACCTGGGAAGACCATGGAAGGCATATTCCAAAGTTGTTATCATGGATTCAGACATTGATGCCATTTTCAA 260 0.4077 MVFGDAFGVFQNCKLTIRKPLEEQKCNVAANGRTKADSASGFVFQSCKFTGEPEVAKIDPKISYLGRPWKAYSKVVIMDSDIDAIF 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme178320g00001 86 Gene3D - 1 86 IPR012334 -
Trme178320g00001 86 Pfam Pectinesterase 2 84 IPR000070 GO:0030599|GO:0042545
Trme178320g00001 86 PANTHER PECTINESTERASE 2 84 - -
Trme178320g00001 86 SUPERFAMILY Pectin lyase-like 2 85 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme178320g00001 Trme-Chr178320 1 351 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme178320g00001 2 82 Carbohydrate Esterase AT3G05610 50.000 4.47e-24 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme178320g00001 K01051 - gmx:100784682 130.568