Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17813g00002 ATGTTTATTACGGAGTTGACAATCCGGTCATGGGATATCGTAGAGGTGAACAAAAGAAAAACACTTCAAAAGAGTGATATTGCATCTGCAATCTCAAGGAATGATATGTTTGATTTTCTAGTTGATATTGTTCCAAGGGAAAACACATTGGAGCATAACATATTTATGAACATACCAAGAAGAGGAAGTGCTCCATTTGCAAATGTCCCTTATTATTATGTTCCTGTTCCTGTGCCAATGCCATCTCAGGATACTGCAGGTCCATCATATGGTCCTCCAAGAATGCTTATGGGAAGATCTCTTATTGATCAACCTCAATTCAACAAACAACTACACCATCCTCTTGCAACTCAAGTGTTGCCAATCCCAAAACAAGANNNNTNNNNNNNNNNTGATTTGCCGGATTCAGATGATTGA 417 0.3717 MFITELTIRSWDIVEVNKRKTLQKSDIASAISRNDMFDFLVDIVPRENTLEHNIFMNIPRRGSAPFANVPYYYVPVPVPMPSQDTAGPSYGPPRMLMGRSLIDQPQFNKQLHHPLATQVLPIPKQXXXXXXDLPDSDD 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17813g00002 138 Gene3D Histone, subunit A 1 46 IPR009072 GO:0046982
Trme17813g00002 138 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 65 - -
Trme17813g00002 138 MobiDBLite consensus disorder prediction 82 109 - -
Trme17813g00002 138 SUPERFAMILY Histone-fold 1 46 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17813g00002 Trme-Chr17813 961 1377 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17813g00002 1 110 CCAAT-HAP5 Transcription Factor Family AT1G54830 45.133 2.25e-24 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17813g00002 K08066 - nnu:104612503 107.071