Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme178105g00001 GGAGTGAATGAAGAAATACTCATGGAGAATTTACCTGAAGATCTTCAGAGGGACATCAGACGCCATCTCTTTAAATTTGTTAAGAAGGTTCGAATTTTTTCCTTGATGGATGAGCCGATATTGGATGCCATTTGTGAGAGACTAAGACAAAAAATATATATCAAAGGAAGCAAAATTTTGTATGATGGTGGCTTGGTAGAGAAAGTGGTTTTTATTGTTCGCGGAAAATTGGAAAGTATTGGTGAAGATGGAATTAGAGTTCCTCTATCGGAAGGCAATGTTTGTGGTGAAGAACTTCTGACATGGTGTCTTGAGCATGCTTCAGGAAACAAAGGTTAG 339 0.3805 GVNEEILMENLPEDLQRDIRRHLFKFVKKVRIFSLMDEPILDAICERLRQKIYIKGSKILYDGGLVEKVVFIVRGKLESIGEDGIRVPLSEGNVCGEELLTWCLEHASGNKG 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme178105g00001 112 SUPERFAMILY cAMP-binding domain-like 21 108 IPR018490 -
Trme178105g00001 112 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 106 - -
Trme178105g00001 112 ProSiteProfiles cAMP/cGMP binding motif profile. 32 100 IPR000595 -
Trme178105g00001 112 Gene3D Jelly Rolls 1 108 IPR014710 -
Trme178105g00001 112 CDD CAP_ED 32 100 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme178105g00001 Trme-Chr178105 2 457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme178105g00001 1 112 Ion Channels AT3G17700 75.893 2.02e-57 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme178105g00001 K05391 - gmx:100782506 199.904