Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme178020g00001 ATGAGCAACATAAGCATGGTAGAGGCAAAGCTTCCACCAGGATTCAGATTTCATCCTAGAGATGAAGAACTTGTTTGTGATTACTTGATGAAGAAGRTGACACATAGTGATTCCTTTCTCATGATTGATGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTGGTTAG 171 0.3977 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKXTHSDSFLMIDVDLNKCEPWDIPG 56
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme178020g00001 56 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 55 - -
Trme178020g00001 56 SUPERFAMILY NAC domain 2 56 IPR036093 GO:0003677|GO:0006355
Trme178020g00001 56 ProSiteProfiles NAC domain profile. 11 56 IPR003441 GO:0003677|GO:0006355
Trme178020g00001 56 Pfam No apical meristem (NAM) protein 12 55 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme178020g00001 Trme-Chr178020 231 401 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme178020g00001 2 55 NAC Transcription Factor Family AT1G56010 70.175 3.38e-24 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme178020g00001 NAM 7.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme178020g00001 - - fve:101304364 114.39