Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme178014g00001 ATGCTCCAAAGTGAAGATGATGAGTTGGATCTTCGACGAGGTCCATGGACGGTTGATGAAGATCTTGCTCTCATCAATTACATTGCAAATCACGGTGAAGGTCGTTGGAATACTCTTGCTCGTTCAGCCG 130 0.4615 MLQSEDDELDLRRGPWTVDEDLALINYIANHGEGRWNTLARSA 43
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme178014g00001 43 ProSiteProfiles Myb-like domain profile. 8 43 IPR001005 -
Trme178014g00001 43 Gene3D - 10 43 - -
Trme178014g00001 43 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 8 43 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trme178014g00001 43 SUPERFAMILY Homeodomain-like 9 42 IPR009057 -
Trme178014g00001 43 CDD SANT 15 41 IPR001005 -
Trme178014g00001 43 Pfam Myb-like DNA-binding domain 13 41 IPR001005 -
Trme178014g00001 43 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 43 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme178014g00001 Trme-Chr178014 228 357 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme178014g00001 6 43 MYB Transcription Factor Family AT5G49620 76.316 6.47e-16 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme178014g00001 Myb_DNA-binding 4.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme178014g00001 K09422 - gmx:100305347 81.2629