Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17798g00001 ATGTTCCAACAATTGATTGATGGTGTAAGCTACTGCCACAATAAAGGTGTCTTCCATAGGGATCTTAAGCTTGAGAATGTACTTTTGGATGCAAAAGGGAACATAAAGATAACTGATTTTAACCTAAGTGCTTTGCCCCAACATTGCAGGGCAGATGGGTTGCTGCATACAACTTGNNNNNNNNNNAATTATGTTGCTCCTGAGATTCTTGCCAATAGAGGCTATGACGGTGCAAAATCCGATATTTGGTCATGTGGTGTTATCTTATATGTAATTCTAACAGGATACCTTCCTTTTGATGATAGAAATCTTGCAGTTCTCTATCAAAAGATTTTCAAAGGAGAAGTTCAGATACCAAGATGGTTGTCACCTGGTGCTCAAAACATAATAAAGAGAATTCTTGATCCCAATCCTAAAACCCGAATAACAATGTCTATGATCAAAGAAGATGAATGGTTTAAGCAGGGTTATAATCCTGCAAATCTAGACGATGAGGAAGAGGATGTTTACATTGATGATGAAGCCTTTTCCATCCAAGAAGTG 543 0.372 MFQQLIDGVSYCHNKGVFHRDLKLENVLLDAKGNIKITDFNLSALPQHCRADGLLHTTXXXXNYVAPEILANRGYDGAKSDIWSCGVILYVILTGYLPFDDRNLAVLYQKIFKGEVQIPRWLSPGAQNIIKRILDPNPKTRITMSMIKEDEWFKQGYNPANLDDEEEDVYIDDEAFSIQEV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17798g00001 181 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 1 161 - -
Trme17798g00001 181 SUPERFAMILY Protein kinase-like (PK-like) 2 162 IPR011009 -
Trme17798g00001 181 SMART serkin_6 1 153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme17798g00001 181 FunFam Maternal embryonic leucine zipper kinase 1 181 - -
Trme17798g00001 181 Gene3D Transferase(Phosphotransferase) domain 1 1 180 - -
Trme17798g00001 181 Pfam Protein kinase domain 2 153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme17798g00001 181 ProSiteProfiles Protein kinase domain profile. 1 153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme17798g00001 181 ProSitePatterns Serine/Threonine protein kinases active-site signature. 17 29 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17798g00001 Trme-Chr17798 94 1070 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17798g00001 1 181 CBL-interacting serine-threonine protein kinases AT3G17510 78.022 2.60e-93 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trme17798g00001 Pkinase 7.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17798g00001 K07198 - gmx:100815660 322.783