Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme177962g00001 ATGTCACACATTGCAAATCAAAGTGCAAAGGGGAAGGCTCCAATGATTGAAGAATCTCAATCCAATGTGGAGACTCAAAGCAAGAGAAAATCAATTGTGGTGGAAGAGAGTGTTGATGCAATTCAAAAGAAACGTTACAAATGTATCTATTGTGAAAAATCATTTGATACTCCACAAGGCCTAGGAGGGCACTATCGTAGTCACAAAAATGAACGAAATGTCAAGCCTAGGGCTACCCCTAGTTCAAGGGGAAAAGAGAGGTTTAGCACTGAAAAATGTAAGGTTGTAATGGCAAATATTGATGCATGGTTTAAGGCTAATAGGACGAATTATCCACAAGTGAAAGAGGCTGATCAAAAG 360 0.3917 MSHIANQSAKGKAPMIEESQSNVETQSKRKSIVVEESVDAIQKKRYKCIYCEKSFDTPQGLGGHYRSHKNERNVKPRATPSSRGKERFSTEKCKVVMANIDAWFKANRTNYPQVKEADQK 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme177962g00001 120 MobiDBLite consensus disorder prediction 60 89 - -
Trme177962g00001 120 MobiDBLite consensus disorder prediction 1 32 - -
Trme177962g00001 120 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Trme177962g00001 120 MobiDBLite consensus disorder prediction 65 89 - -
Trme177962g00001 120 MobiDBLite consensus disorder prediction 1 28 - -
Trme177962g00001 120 Pfam C2H2-type zinc finger 45 69 - -
Trme177962g00001 120 SUPERFAMILY beta-beta-alpha zinc fingers 42 74 IPR036236 -
Trme177962g00001 120 Gene3D Classic Zinc Finger 16 106 - -
Trme177962g00001 120 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme177962g00001 33 78 C2H2 Transcription Factor Family AT5G25160 39.130 9.49e-08 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme177962g00001 zf-C2H2_6 6.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme177962g00001 - K09228 vvo:131614657 85.8853