Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17793g00001 CAGACTGAGCCTGTAGATCCTGATCCGAATCCTCCCGAGTCTCCAAAACAGAAGTTTCACTCGTTTTGCAAAATATTAACGGCTTCTGATACTAGCACACATGGAGGATTTTCTGTTTTGAGGAAGCATGCTACTGAGTGCTTGCCACCATTGGACATGACACAAGCAACTCCAACTCAGGAGCTAGTAGCAAAAGATCTTCATGGATTTGAGTGGAAGTTTAAGCACATATATAGAGATATAGTTGGAGTTCGATATAGGGGAGAGGACGGGCAACTGAGAGTTGGCGTTAGGCGTATGTCTAAGCAGCATTGTCCTATGCCTTCATCTGTGATATCAAGCCAAAGTATGAATCTCGGAGTGCTTGCAACTGCTTCCCATGCTGTTATGACTAATACCATGTTCGTTGTTTATTACAAACCAAGGACTAGTCAGTTTATTGTTGGTTTGAACAAGTATTTGGAGGCAGTCAACAATTATATGTTTTCTGTTGGTATGAGATTCAAGATGAGATTTGAAGGAGATGACTCGCCCGAAAGAAGGTATGCTAATTAA 555 0.418 QTEPVDPDPNPPESPKQKFHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTQATPTQELVAKDLHGFEWKFKHIYRDIVGVRYRGEDGQLRVGVRRMSKQHCPMPSSVISSQSMNLGVLATASHAVMTNTMFVVYYKPRTSQFIVGLNKYLEAVNNYMFSVGMRFKMRFEGDDSPERRYAN 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17793g00001 184 CDD B3_DNA 20 99 IPR003340 GO:0003677
Trme17793g00001 184 Gene3D - 19 83 IPR015300 -
Trme17793g00001 184 Pfam Auxin response factor 125 182 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trme17793g00001 184 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 87 182 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme17793g00001 184 Gene3D - 161 184 - -
Trme17793g00001 184 SUPERFAMILY DNA-binding pseudobarrel domain 13 128 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17793g00001 Trme-Chr17793 235 1309 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17793g00001 3 183 B3 DNA Binding Superfamily AT4G23980 67.157 6.92e-84 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trme17793g00001 Auxin_resp 1.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17793g00001 K14486 - gmx:100795763 295.434