Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17786g00001 ATGGGCAACTGCGGTACCAGAGAAGAATCCGCCGTAGTCACCAATGCTCAAGTTCAGCAGTTACATCCTGCTGCCGGAGCTAGAAACCAAACCTCCGTCACCGGCGGCGCTACTGAGAGAAAAAACTCTAGTCTCCGACATCATCTAACCGATTCCGCTTCGGATCTGAGCGAGTCTTGTTCAACACCTCGCTGGAACAACGCCAATAACAACAATACTCTTCTTTATACTCATGTTATAGCCTTCACGCTCTATGAACTCGAAACTATAACGAAGAGTTTTCGCACCGATTATATTTTGGGTGAAGGAGGGTTTGGTACTGTTTATAAAGGCTACATTGATGAAAACGTTAGGGTTGGACTTAAATCGCTTCCTGTTGCAGTTAAAGTTTTGAATAAAGAAGGACTTCAAGGACATCGAGAGTGGCTTGCGGAGGTGAATTTTCTTGGACAGCTTAGGCATCCTAATCTTGTGAAGTTGATTGGTTACTGCTGTGAGGATGATCATAGGTTGCTTGTCTATGAATTCATGTTTCGAGGAAGTCTCGAAAATCATCTATTCCGAA 565 0.4407 MGNCGTREESAVVTNAQVQQLHPAAGARNQTSVTGGATERKNSSLRHHLTDSASDLSESCSTPRWNNANNNNTLLYTHVIAFTLYELETITKSFRTDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLAEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFR 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17786g00001 188 MobiDBLite consensus disorder prediction 21 57 - -
Trme17786g00001 188 PANTHER OS01G0588500 PROTEIN-RELATED 56 188 - -
Trme17786g00001 188 FunFam Serine/threonine-protein kinase BIK1 61 176 - -
Trme17786g00001 188 ProSiteProfiles Protein kinase domain profile. 94 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme17786g00001 188 MobiDBLite consensus disorder prediction 21 40 - -
Trme17786g00001 188 Gene3D Phosphorylase Kinase; domain 1 54 176 - -
Trme17786g00001 188 ProSitePatterns Protein kinases ATP-binding region signature. 100 129 IPR017441 GO:0005524
Trme17786g00001 188 Pfam Protein tyrosine and serine/threonine kinase 98 186 IPR001245 GO:0004672|GO:0006468
Trme17786g00001 188 SUPERFAMILY Protein kinase-like (PK-like) 68 187 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17786g00001 Trme-Chr17786 133 905 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17786g00001 57 187 Glycoside Hydrolase AT3G07070 47.015 6.60e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme17786g00001 PK_Tyr_Ser-Thr 4.3e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17786g00001 - - gmx:102662348 301.597