Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme177868g00001 ATGGTTAAGCTTGGTTTTGTTTCGGTTCTTTTGGGGATGGTTAAGTCGGGTCATATGATGGGTCAGGTTTTGTTGATTTTGGGTAATTTGGGATTTGGGTCGGATGGTCGGGCTGCTATGTTGGANGCGGGTGTTGTGGAGTGTTTGGTTGGTTTATTGGGTGGGGTTGAGTTGGATTCTGAGTCGATTCGAGAGAGTTGTATTGGGGTTCTATATGCATTGAGTCACGGCGGATTGAGGTTTAAGTCGGTGGCGAAAGAGGTTGGAGTTGTCGAAATGTTGGAAAAGATGGAGAAAATGAAGAGTGAGAAGGCTAACGAGAAGGTGAGGAGGATATTGGAGATGATGAGTGAGAAAGAGGTGGAAGAGGAGGAGGTGGATTGGGAGGAGTTGCTTGACTCAGGGTTCAGTTGTCGAACTATGAGTCGACAAGATAGTGGGTTGGACGAGTCAA 454 0.467 MVKLGFVSVLLGMVKSGHMMGQVLLILGNLGFGSDGRAAMLXAGVVECLVGLLGGVELDSESIRESCIGVLYALSHGGLRFKSVAKEVGVVEMLEKMEKMKSEKANEKVRRILEMMSEKEVEEEEVDWEELLDSGFSCRTMSRQDSGLDES 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme177868g00001 151 SUPERFAMILY ARM repeat 2 129 IPR016024 -
Trme177868g00001 151 Coils Coil 90 110 - -
Trme177868g00001 151 Gene3D - 1 116 IPR011989 -
Trme177868g00001 151 SMART arm_5 33 76 IPR000225 GO:0005515
Trme177868g00001 151 PANTHER U BOX DOMAIN-CONTAINING 1 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme177868g00001 Trme-Chr177868 8 461 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme177868g00001 1 143 U-box Gene Family AT5G40140 50.336 4.23e-36 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme177868g00001 - - lja:Lj2g3v1020040.1 164.466