Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme177866g00001 ATGAGGCGGGCTACCGGAGAGGATTATTCAGTCGAACCAGCTGAGTCCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTGTTAAGACCACGACCGGCAACCGTGTCTTTGGTGCACTCAAGGGAGCTTTGGATGGAGGTTTGGATATTCCTCA 158 0.5316 MRRATGEDYSVEPAESRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIP 52
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme177866g00001 52 SUPERFAMILY Translational machinery components 14 52 - -
Trme177866g00001 52 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 3 52 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Trme177866g00001 52 Gene3D - 1 52 - -
Trme177866g00001 52 PANTHER RIBOSOMAL PROTEIN L5-RELATED 3 52 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Trme177866g00001 52 PRINTS Ribosomal protein L5 signature 23 42 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Trme177866g00001 52 PRINTS Ribosomal protein L5 signature 43 52 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme177866g00001 Trme-Chr177866 1 426 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme177866g00001 4 52 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 89.796 7.17e-27 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme177866g00001 K02932 - atr:18448669 93.5893