Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme177557g00001 ATGCTGATAAGGTACTCTTACAAAGACATCAAAACGATAACAGAACAATTCAAGACAAAACTAGGCAATGGAGGTTACGGATCTGTTTTCAAAGGAAAACTTCGAAGTGGCCGTCTTGTAGCAGTAAAGTTATTGGACAAAGCCAAGTCCAACGGTCAAGATTTTGTTAATGAAGTTGCTACAATAGGCAGGATTCACCATGTTAATGTGGTACAACTCATTGGTTTTTGTGTGGAGGGGTCAAAACGTGGTCTTGTATATGAGTTCATGCCTAATGGTTCACTCGAAAAATACATATTTTCTCATACTGAAGCGAGTAATTCCTTGAGTTGTGAAAAATTGTATGCCATTTCTCTTGGTGTGGCTCGAGGCATTGAGTACTTGCATAATGGATGCAATATGAAAATTCTACACTTTGACATA 423 0.3806 MLIRYSYKDIKTITEQFKTKLGNGGYGSVFKGKLRSGRLVAVKLLDKAKSNGQDFVNEVATIGRIHHVNVVQLIGFCVEGSKRGLVYEFMPNGSLEKYIFSHTEASNSLSCEKLYAISLGVARGIEYLHNGCNMKILHFDI 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme177557g00001 141 SMART tyrkin_6 15 141 IPR020635 GO:0004713|GO:0006468
Trme177557g00001 141 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Trme177557g00001 141 Pfam Protein tyrosine and serine/threonine kinase 17 140 IPR001245 GO:0004672|GO:0006468
Trme177557g00001 141 PANTHER RUST RESISTANCE KINASE LR10-RELATED 4 141 IPR045874 GO:0004672
Trme177557g00001 141 ProSitePatterns Protein kinases ATP-binding region signature. 21 43 IPR017441 GO:0005524
Trme177557g00001 141 SUPERFAMILY Protein kinase-like (PK-like) 4 141 IPR011009 -
Trme177557g00001 141 ProSiteProfiles Protein kinase domain profile. 15 141 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme177557g00001 141 FunFam serine/threonine-protein kinase PBS1-like 1 89 - -
Trme177557g00001 141 Gene3D Transferase(Phosphotransferase) domain 1 90 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme177557g00001 Trme-Chr177557 1 423 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme177557g00001 2 141 Receptor kinase-like Gene Family AT1G66910 52.143 1.31e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme177557g00001 PK_Tyr_Ser-Thr 1.5e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme177557g00001 - - psat:127093935 252.677