Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17714g00001 CAAGGTCTGACTTTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCATTGGAACACTGCTTGTGTGTTAACGGGTTTCCTGCAACTTGCATTCATGGTGATAGAACACAGCAAGAAAGAGAACAAGCATTGAGGTCATTCAAGACTGGAAACACTCCAATTCTAGTGGCAACAGATGTTGCAGCACGTGGACTTGATATTCCACGGGTAGCACATGTGGTAAACTTTGATCTTCCCAATGACATTGATGATTATGTGCACCGGATAGGAAGAACAGGGCGAGCTGGTAAAATGGGACTAGCAACAGCTTTCTTCAATGACAGTAATTTGTCAATGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCTTGGCTCACCCGTTATGCAGCAAGGACTCCTTATGGTGGCAGTAGAAATAAGCGGACCGGGGGAGCCCGTTTTGGTGGCCGTGATGTTAGGAAGGAAAGCTCATATAATAAAGGAAATGATTACTACGGCGGAACTGGTGGTGGTTATGGGGTTCCTGCG 546 0.456 QGLTLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQEREQALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDSNLSMAKPLADLMQEANQEVPAWLTRYAARTPYGGSRNKRTGGARFGGRDVRKESSYNKGNDYYGGTGGGYGVPA 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17714g00001 182 MobiDBLite consensus disorder prediction 150 164 - -
Trme17714g00001 182 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 163 IPR027417 -
Trme17714g00001 182 Gene3D - 1 138 IPR027417 -
Trme17714g00001 182 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 4 135 - -
Trme17714g00001 182 FunFam ATP-dependent RNA helicase RhlB 1 138 - -
Trme17714g00001 182 Pfam Helicase conserved C-terminal domain 2 96 IPR001650 -
Trme17714g00001 182 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 135 IPR001650 -
Trme17714g00001 182 SMART helicmild6 15 96 IPR001650 -
Trme17714g00001 182 MobiDBLite consensus disorder prediction 141 166 - -
Trme17714g00001 182 CDD SF2_C_DEAD 2 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17714g00001 Trme-Chr17714 193 1422 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17714g00001 5 128 Eukaryotic Initiation Factors Gene Family AT3G19760 34.677 8.98e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17714g00001 K11594 - gmx:100800039 306.219