Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme177137g00001 GAGCTCGGTATTACCGCACTTCACATCAAGCTCCGTGCTACTGGTGGAAATAAGACCAAAACACCTGGCCCAGGTGCTCAAGCTGCTCTCCGTGCCCTTGCTCGTTCAGGAATGAAAATTGGCCGTATAGGTATTTGA 138 0.5072 ELGITALHIKLRATGGNKTKTPGPGAQAALRALARSGMKIGRIGI 45
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme177137g00001 45 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 1 43 IPR001971 GO:0003735|GO:0005840|GO:0006412
Trme177137g00001 45 Pfam Ribosomal protein S11 1 43 IPR001971 GO:0003735|GO:0005840|GO:0006412
Trme177137g00001 45 SUPERFAMILY Translational machinery components 1 43 - -
Trme177137g00001 45 Gene3D Ribosomal protein S11 1 44 IPR036967 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme177137g00001 Trme-Chr177137 125 262 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme177137g00001 1 43 Cytoplasmic Ribosomal Protein Gene Family AT2G36160 93.023 1.18e-23 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme177137g00001 K02955 - qsu:112027012 81.6481