Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17702g00001 ATGTTACTGAAAATTGGATCAGCTGATGTTACAACCCTTGGCTTATGGGGCATGGGTGGTATAGGAAAGACCACTCTGGCTGAATATGCATATACTAAACTGTCTTTTCAATTCGAACGTCGTTGTTTGCTGGAAAATGTAAGGGAAGAATCTACCAAGCGCGGACTCCCAGCTGTACGTGAACTTTTTCTTTCTAAATTGTTNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNAATTTTAGAAAGAAGACTTGCATGTGCAAAAAGTTTAATTGTGTTGGATGATGTGGCAACTTTAGCGCAAGCAGAAAATCTTAACATGTGTTTGGGACCGGGTAGTAGAGTCATTGTCACAGCTAGAGATAATCAAATATTTAGTCGGTTTAATAAATGTGAAATTTATGAGGTTGAAGGATTGGACGAAGATGACTCTCTTCAATTATTCTGTTGGTATGCCTTCCAGAAAAAACATGCTAAAGTTGGATATGAAGAGCTCTCAGAAAGGGCAACTAGGTATTGCGGAGGCAATCCTSWAGCTTTAAAAGTCTTAGGTGCGAATTTCGGTACAAAARGTAAAGAAGTGTGGGAAAGTGAACTGGAGAAGCTCAAAAAGAATCCTAATAGGAGTATTCATGAAGTGTTAAAATTGAGTTTCAATGACTTAGATCCTACTGAACAAGACATATTTCTAGACATTGCATGCTTCTTCGAGTTAAGATTACATGATAGTGATATTGATGATGATCTTCCCATGACAGTGCTATTGGATGCTTGCGATTTTTGTGCAGTAAGTGGGATAGAAGCCCTTTGCAATAAAGCACTCATAACTCGTAATCATAATAATTCAATTAAAATGCATGATTTGTTAGTAGAAATGGGACGAGAGATTGTTAATGAAAAATCTCGTAAAAACCCCGGAAGAAGAAGTCGATTGTGGGATTCTAAGGATGTGTATGATGTATTGAAATATAACAACAAGGGAACTGAAGATGTTGAAGTTATAAGTTTCAATATCGAAATTTCCAAAATTGAGGATCTAGACTTGAGCTCTGATTACTTTAAAAGTCTTAAATGGTTATCTGATAAATTGAGGTACCTTCATTGGGATTTATTCCCACTTAAGTCTTTACCATCGACCTTTTGTCCCGAAATGCTTGTAGTACTTAAGATGACCCGTGGCAAGCTTAGAAAGCTTTGGGATGGAATT 1218 0.3555 MLLKIGSADVTTLGLWGMGGIGKTTLAEYAYTKLSFQFERRCLLENVREESTKRGLPAVRELFLSKLXXXXXXXXXXXXXXXILERRLACAKSLIVLDDVATLAQAENLNMCLGPGSRVIVTARDNQIFSRFNKCEIYEVEGLDEDDSLQLFCWYAFQKKHAKVGYEELSERATRYCGGNPXALKVLGANFGTKXKEVWESELEKLKKNPNRSIHEVLKLSFNDLDPTEQDIFLDIACFFELRLHDSDIDDDLPMTVLLDACDFCAVSGIEALCNKALITRNHNNSIKMHDLLVEMGREIVNEKSRKNPGRRSRLWDSKDVYDVLKYNNKGTEDVEVISFNIEISKIEDLDLSSDYFKSLKWLSDKLRYLHWDLFPLKSLPSTFCPEMLVVLKMTRGKLRKLWDGI 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17702g00001 406 Coils Coil 83 87 - -
Trme17702g00001 406 Pfam NB-ARC domain 3 212 IPR002182 GO:0043531
Trme17702g00001 406 Gene3D - 1 139 IPR027417 -
Trme17702g00001 406 Gene3D - 142 226 IPR042197 -
Trme17702g00001 406 PRINTS Disease resistance protein signature 87 101 - -
Trme17702g00001 406 PRINTS Disease resistance protein signature 177 191 - -
Trme17702g00001 406 PRINTS Disease resistance protein signature 12 27 - -
Trme17702g00001 406 PRINTS Disease resistance protein signature 342 358 - -
Trme17702g00001 406 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 402 IPR044974 GO:0006952
Trme17702g00001 406 SUPERFAMILY "Winged helix" DNA-binding domain 213 326 IPR036390 -
Trme17702g00001 406 Coils Coil 67 67 - -
Trme17702g00001 406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 236 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17702g00001 Trme-Chr17702 1 1387 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17702g00001 2 405 WRKY Transcription Factor Family AT4G12020 33.643 5.92e-56 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17702g00001 - - vvo:131628915 415.616