Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme176956g00001 TCCGGCGAAACCGTTGCTTTGAAAGTAATGGATTCACCTGGTTCGATTCAAGGAGAGAGAGAGTTTCATAACGAACTTTCTCTTTGTTCAAATCTGAATTCTCCTTTCATTCTTTCACTTCTCGGTTATTCTTCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANGAACTTATGGTGAACCGGAGTCTTCAAGATGCGCTATTGGACCGGAGGTGTGTTGAATTGATGTGTTGGTCGAACCGGTTCGATGTTGTTGTTTCGGTTGCTAAAGGACTTGAGTATCTTCATCATCAATGTCATCCTCCGGTGATTCATGGTGATATTAAACCGAGTAATGTTCTTTTGGATCGTGAATTTAGGGCTAAGATTGGGGATTTTGGTCTTGCTAGGGTTAAGTGTTTGGAAGATTCTGGAATGGAGATGATGGTTGAAGAGATTCATGTGAAGAAAAAAAGAGAGGATCTTGTTGTTGGTGTTGAGG 484 0.3843 SGETVALKVMDSPGSIQGEREFHNELSLCSNLNSPFILSLLGYSSXXXXXXXXXXXELMVNRSLQDALLDRRCVELMCWSNRFDVVVSVAKGLEYLHHQCHPPVIHGDIKPSNVLLDREFRAKIGDFGLARVKCLEDSGMEMMVEEIHVKKKREDLVVGVE 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme176956g00001 161 ProSiteProfiles Protein kinase domain profile. 1 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme176956g00001 161 SUPERFAMILY Protein kinase-like (PK-like) 1 138 IPR011009 -
Trme176956g00001 161 PANTHER OS07G0586332 PROTEIN 2 152 IPR044576 -
Trme176956g00001 161 ProSitePatterns Serine/Threonine protein kinases active-site signature. 104 116 IPR008271 GO:0004672|GO:0006468
Trme176956g00001 161 Gene3D Transferase(Phosphotransferase) domain 1 1 150 - -
Trme176956g00001 161 Pfam Protein kinase domain 2 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme176956g00001 161 SMART serkin_6 1 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme176956g00001 161 FunFam Os07g0541700 protein 59 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme176956g00001 Trme-Chr176956 1 484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme176956g00001 2 132 Receptor kinase-like Gene Family AT3G58690 48.889 2.07e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Trme176956g00001 Pkinase 4.1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme176956g00001 - - aip:107626015 222.246