Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme176889g00001 AATAACCTCTTCAACAATCTATTGAAGTTTGCTCATGAGAATGATGACACTATAGCTGAGGTGACTTTGAGGGATGCGGTTGCGGATACTGAACGTGGATTTTTGGATTATGTGAAAAATAATATTGGTCAAATTCCGACGATTGGAAAAGCTGGTTCATGCTGTCTTGCTGGAGTTTTGTGGAAGGGTGTGCTGTATGTCGCGAATCTTGGAGATTCNCGTGCTGTAATTGGTTCCGTGGTTGATAAAAGAGTCAGTGCTGTACAATTGACAAGAGATCACAACTGTAATGATGAGGCCATTCGACAAGAACTCATCTCATTGCACCCCGATGATCCTACCATTGTGATGGAGAAGAACGGGTGGCGCGTTAAAGGCATCATTA 385 0.4286 NNLFNNLLKFAHENDDTIAEVTLRDAVADTERGFLDYVKNNIGQIPTIGKAGSCCLAGVLWKGVLYVANLGDSRAVIGSVVDKRVSAVQLTRDHNCNDEAIRQELISLHPDDPTIVMEKNGWRVKGII 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme176889g00001 128 PANTHER PROTEIN PHOSPHATASE 2 128 IPR015655 GO:0004722|GO:0006470
Trme176889g00001 128 Gene3D - 1 128 IPR036457 -
Trme176889g00001 128 Pfam Protein phosphatase 2C 24 99 IPR001932 -
Trme176889g00001 128 SUPERFAMILY PP2C-like 5 111 IPR036457 -
Trme176889g00001 128 ProSiteProfiles PPM-type phosphatase domain profile. 1 128 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme176889g00001 Trme-Chr176889 1 482 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme176889g00001 1 128 PP2C-type Phosphatase Gene Family AT5G06750 50.000 9.83e-37 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme176889g00001 K01102 - csv:101222146 137.117