Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme176815g00001 AAGACGACTAAAAAGGAGAAGAAGGCCAAGAAAGATCCCAACAAACCAAAAAGACCTCCAAGCGCTTTCTTTGTCTTCCTTGAGGATTTCAGAAAGACTTTTAAGGCAGAAAATCCTAATGTGAAGGCTGTATCAGCGGTCGGAAAAGCTGGAGGAGAGAAATGGAAATCTTTGACTAAGGCGGTAAGCAATGCAATCTTTAAGACATGCTGA 213 0.4178 KTTKKEKKAKKDPNKPKRPPSAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTKAVSNAIFKTC 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme176815g00001 70 MobiDBLite consensus disorder prediction 1 20 - -
Trme176815g00001 70 MobiDBLite consensus disorder prediction 1 17 - -
Trme176815g00001 70 Pfam HMG (high mobility group) box 16 61 IPR009071 -
Trme176815g00001 70 SMART hmgende2 15 67 IPR009071 -
Trme176815g00001 70 Gene3D High mobility group box domain 1 68 IPR036910 -
Trme176815g00001 70 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 61 IPR031061 -
Trme176815g00001 70 SUPERFAMILY HMG-box 3 60 IPR036910 -
Trme176815g00001 70 CDD HMG-box_AtHMGB1-like 17 61 - -
Trme176815g00001 70 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 16 70 IPR009071 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trme176815g00001 HMG_box 2.7e-15 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme176815g00001 K25507 - ini:109157843 102.449