Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme176444g00001 ATGATAAGTATTTTCTACAAGCCAGCTCATGAACTTCGTCATGATTCAAAAGTTTGGGCAATAGTGTTTGAAGCGGTTGCTGTGGCATCATTACTCATTATTCCATGTAGATTCTACTTTTTTGGTGTTGCTGGAGGTAAGTTGATCCAAAGGATCCGGAAAGTGTGTTTTGAGAAAGTAGTTCACATGAACGTAAGTTGGTTTGATGAGGCTGAGCATTCAAGCGGATCACTTGGAGCAAGGCTCTCTACTGATGCAGCTTCAGTTAGAGCTCTGGTTGGAGATGCACTTGGTTTGCTGGTTCAAAATATTTCTTCAGTAATAGCTGGCTTG 333 0.4144 MISIFYKPAHELRHDSKVWAIVFEAVAVASLLIIPCRFYFFGVAGGKLIQRIRKVCFEKVVHMNVSWFDEAEHSSGSLGARLSTDAASVRALVGDALGLLVQNISSVIAGL 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme176444g00001 111 Gene3D ABC transporter type 1, transmembrane domain 1 111 IPR036640 GO:0005524|GO:0016020
Trme176444g00001 111 SUPERFAMILY ABC transporter transmembrane region 15 110 IPR036640 GO:0005524|GO:0016020
Trme176444g00001 111 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 111 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme176444g00001 111 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 18 111 IPR039421 -
Trme176444g00001 111 Pfam ABC transporter transmembrane region 14 111 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme176444g00001 Trme-Chr176444 39 371 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme176444g00001 1 105 Calmodulin-binding Proteins AT2G36910 28.972 5.36e-14 64.7