Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme176371g00001 GCAAGGAGAAAGCAACGTGGTCTTTGTATACTTAATGGCACTGGTTGTGTAACAAATGTAACGCTGCGCCAACCGGCTTCATCTGGTGCAATTGTGACCCTTCATGGTCGATTTGAGATTCTCTCGTTGTTGGGGTCGATTCTTCCCCCACCGGCACCACCAGGAATTACTGGTCTAACAATTTATTTAGCAGGTGCTCAAGGACAAGTTGTTGGAGGTGCTGTAGTTGGTGCTTTGATTGCTTCAGGACCTGTTGTGATCATGGCTGCATCATTCATGCACGCTACTTTCGATCGTCTGCCACTCGAAGACGATGAACTTGCTGCTGCTATGCAGAATCAGCATTACCAAAATGGACGCGCGCAACATCATCTTGATATCTCTGACTTATATGCAATGCCACAGAACCTCCTCATGAATGGTGCAATGCCTCCTGAGATATACTCTTGGGCACCAGGGAGAAACTTGTCAAAAACCTGA 480 0.4708 ARRKQRGLCILNGTGCVTNVTLRQPASSGAIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGAVVGALIASGPVVIMAASFMHATFDRLPLEDDELAAAMQNQHYQNGRAQHHLDISDLYAMPQNLLMNGAMPPEIYSWAPGRNLSKT 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme176371g00001 159 Pfam Plants and Prokaryotes Conserved (PCC) domain 2 92 IPR005175 -
Trme176371g00001 159 CDD DUF296 1 63 IPR005175 -
Trme176371g00001 159 ProSiteProfiles PPC domain profile profile. 1 115 IPR005175 -
Trme176371g00001 159 SUPERFAMILY AF0104/ALDC/Ptd012-like 3 109 - -
Trme176371g00001 159 Gene3D - 1 124 - -
Trme176371g00001 159 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 123 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme176371g00001 Trme-Chr176371 6 485 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme176371g00001 1 158 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 75.000 2.69e-69 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme176371g00001 - - gmx:100804941 256.529