Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme176351g00001 ATGAAGAACAGAAAACCAAACCCTCGCGTTTGGGCTCTTAGCCCGTTGCTTTTGCGTCCGTTTTTCCCGTCTCCGCCGCCTTTGGTTTCCGGTGAGCCACCAGCGAAGAAACAGAAGAAAAAGGCCCAGGCCCAAGTTGGTGAGGTTGAGGCCCAAGACGAGGNNNNNNNNNTNNNNNNNNNNAGTCATTGCCAGGTTCAGAAGACGCCCCAGTGGAGAACCGGTCCGTTAGGAGCTAAAACCCTTTGTAACGCGTGTGGGGTTCGGTATAAGTCCGGTCGGCTTTTTTCGGAGTATAGACCGGCTTGTAGCCCAACTTTCAGCAGTGAAATTCATTCCAATAGTCACCGGAAAGTGTTGGAGATGAGGAGGAGGAAAGGGATGGTTGGACCGGAACCCGGTTTACCGGCTCAGACCCAAATGGTTACGACTTG 434 0.5069 MKNRKPNPRVWALSPLLLRPFFPSPPPLVSGEPPAKKQKKKAQAQVGEVEAQDEXXXXXXXSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFSSEIHSNSHRKVLEMRRRKGMVGPEPGLPAQTQMVTT 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme176351g00001 144 MobiDBLite consensus disorder prediction 23 54 - -
Trme176351g00001 144 PANTHER GATA TRANSCRIPTION FACTOR 33 131 - -
Trme176351g00001 144 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 62 117 - -
Trme176351g00001 144 CDD ZnF_GATA 62 117 IPR000679 GO:0006355|GO:0043565
Trme176351g00001 144 SMART GATA_3 55 109 IPR000679 GO:0006355|GO:0043565
Trme176351g00001 144 Pfam GATA zinc finger 62 94 IPR000679 GO:0006355|GO:0043565
Trme176351g00001 144 Gene3D - 62 105 IPR013088 GO:0006355|GO:0008270
Trme176351g00001 144 FunFam GATA transcription factor 52 135 - -
Trme176351g00001 144 ProSiteProfiles GATA-type zinc finger domain profile. 55 91 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme176351g00001 Trme-Chr176351 1 434 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme176351g00001 2 126 C2C2-Gata Transcription Factor Family AT4G36240 55.906 2.43e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trme176351g00001 GATA 3.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme176351g00001 - - gmx:100780311 154.836