Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17633g00001 CTTGAATATGTAGAAGACAAATGGGTTTGCGATGGTTCAGGTCGAGCTTGTAGCTTAGGTGAAGAGACTGCTAGGAGATACTTGCGTGACATAGTTTCTGGATTAATGTATCTCCATGCTCATAATATAGTACATGGGGATATCAAACCTGACAATCTGTTGATTACTCGTCATGGTACAGTGAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGATGATAATGATATGCTTCGACGATCACCTGGCACTCCTGTTTTCACTGCACCTGAATGTATTTTAGATATTACTTACAGTGGTAAAGCCGCTGACACATGGGCTGTAGGAGTTACTTTATACTGTATGGTATTGGGTGATTACCCTTTTCTTGGTGACACACTTCAAGATACATATGACAGAGAAAGCATATTCAACTAG 420 0.4095 LEYVEDKWVCDGSGRACSLGEETARRYLRDIVSGLMYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAFEDDNDMLRRSPGTPVFTAPECILDITYSGKAADTWAVGVTLYCMVLGDYPFLGDTLQDTYDRESIFN 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17633g00001 139 SMART serkin_6 1 138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme17633g00001 139 Pfam Protein kinase domain 2 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme17633g00001 139 Gene3D Transferase(Phosphotransferase) domain 1 1 137 - -
Trme17633g00001 139 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 2 134 - -
Trme17633g00001 139 ProSiteProfiles Protein kinase domain profile. 1 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme17633g00001 139 SUPERFAMILY Protein kinase-like (PK-like) 17 133 IPR011009 -
Trme17633g00001 139 ProSitePatterns Serine/Threonine protein kinases active-site signature. 43 55 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17633g00001 Trme-Chr17633 152 1391 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17633g00001 15 134 Miscellaneous Gene Families AT3G23000 38.843 3.00e-25 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Trme17633g00001 Pkinase 1.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17633g00001 K00908 - gmx:100807940 252.677