Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17628g00001 ATGAATGTCAACACTTCCATGACAAATGTGACCGGACGCGTGATTGGGCCTCCAGCATTGAAGTTAAGTGATCCACGTGGAAAGAGTACTTCTGTCAAACTGGATGCAGAGAAATGCCATTGGAATCTACTTGGAAGGTCAATGGTAGAAGGAAAACCTGTTGAGTGTTGGGGCATCCTTGATTTTACCAGCAATGGACCTAATTGGGGCAGATTAAGAGGCAATCAGTTCGTTAACAATCTTATGGATAAGTACCGAAAGTTGGGCATTGTCATGAAGGAACCTGTTTGTTATGAGCATTCTTCAATGCAGAAACTTGGGGATTACAATTCACTTAGTGACTTACTTGAAAAAATAAATGATAGGGTTCAAAAAAACTGTCGACAGAGGCTGCAATTTCTTCTTTGTGTGATGGCCAACAGGGATCATGGTTACAAGTGCCTCAAGTGGATTGCTGAGACCAAGGTTGGCATAGTGACACAGTGCTGCTTATCTGGTAATGCTAATGAAGGGAAAGACCAATATCTCACAAATCTTGCTCTAAAAATCAATGCAAAAATTGGAGGCAGTAACGTGGAGCTCATTAATAGGCTCCCACACTTTGAGGATGAAAGTCATGTTATGTTTATAGGGGCTGATGTCAATCATCCAGGCTCTCGGGACATAGATAGTCCATCAATTGCTGCAGTGGTTGCCACTATTAACTGGCCCGCTGCAAATCGCTATGCAGCACGTGTTTGTGCTCAAGAGCATCGAATGGAGAAAATTTTGAATTTTGGAGAGGAGTTGACAGATTTGAAGACCGTTTTTCAGCGCTCGAATTACTTTCCAACTATCACTCTTATTGTAGCCCAAAAGCGACATCAAACTCGATTGTTTCCTACTGGTCCAAAGGAAGGGACTGCGAATGGCAATGTGTTCCCTGGAACAGTTGTGGACACAAAGGTCGTACATCCTTTTGAATTTGATTTTTACCTTTGTAGTCACTATGGAAGCCTAGGTACAAGCAAGCCCACTCACTATTATGTCTTGTGGGATGAGCACAAGTTTACTTCTGATGATTTGCAGAAGCTCATATATGATATGTGCTTTACCTTTGCAAGGTGCACTAAACCTGTATCTTTAGTCCCTCCAGTGTACTATGCTGACCTTGCTGCCTATAGAGGAAGGCTATACTATGAAGCAAGGATGTCGGCACAATCTCCAGATTCAGCTGTGTCTTCTTCATCATCACATTTAGCTTCTTCATCCTCTTCTTCCACCACCTCAATTT 1273 0.425 MNVNTSMTNVTGRVIGPPALKLSDPRGKSTSVKLDAEKCHWNLLGRSMVEGKPVECWGILDFTSNGPNWGRLRGNQFVNNLMDKYRKLGIVMKEPVCYEHSSMQKLGDYNSLSDLLEKINDRVQKNCRQRLQFLLCVMANRDHGYKCLKWIAETKVGIVTQCCLSGNANEGKDQYLTNLALKINAKIGGSNVELINRLPHFEDESHVMFIGADVNHPGSRDIDSPSIAAVVATINWPAANRYAARVCAQEHRMEKILNFGEELTDLKTVFQRSNYFPTITLIVAQKRHQTRLFPTGPKEGTANGNVFPGTVVDTKVVHPFEFDFYLCSHYGSLGTSKPTHYYVLWDEHKFTSDDLQKLIYDMCFTFARCTKPVSLVPPVYYADLAAYRGRLYYEARMSAQSPDSAVSSSSSHLASSSSSSTTSI 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17628g00001 424 SUPERFAMILY Ribonuclease H-like 117 394 IPR012337 -
Trme17628g00001 424 Gene3D - 197 262 IPR036397 GO:0003676
Trme17628g00001 424 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 258 - -
Trme17628g00001 424 MobiDBLite consensus disorder prediction 402 424 - -
Trme17628g00001 424 Pfam Piwi domain 261 393 IPR003165 GO:0003676
Trme17628g00001 424 Gene3D - 14 195 - -
Trme17628g00001 424 Gene3D - 263 423 IPR036397 GO:0003676
Trme17628g00001 424 ProSiteProfiles Piwi domain profile. 133 394 IPR003165 GO:0003676
Trme17628g00001 424 SMART Piwi_a_2 133 394 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17628g00001 Trme-Chr17628 1 1387 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17628g00001 1 397 Eukaryotic Initiation Factors Gene Family AT5G43810 35.991 5.01e-82 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17628g00001 K11593 - gmx:100805250 662.529