Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme176234g00001 GGAACTGTAGGGTATCTAGCTCCTGAGCATACAAGAACAGGTAAAGCCACTAAATTTACTGATGTGTTTGCTTTCGGTGCTTTTCTTCTCGAGGTTGTTTGTGGTAAGAGACCTATAGATCATGTTGGCGAAAACGAGACTGTAATTCTAGTTGATTCTGTGTTTGAATGTTGGAAAAGAGAACCTATGGCTAGACCAAGTATGAGACAAGTTGTGCAGTATTTGGAGAGGGATATACCTTTACCAGATTTGTCTTTGCTTAGTTTATCTTCTTCTGGTTTAACTTTTGGGTACCAAGAATTTTTTGAGGACTTTCCAATGTCATATCCATCTACTATGGACAAGACAATGTCACATACTTCTGTATCTATTGCTGATTCACTTCT 386 0.3834 GTVGYLAPEHTRTGKATKFTDVFAFGAFLLEVVCGKRPIDHVGENETVILVDSVFECWKREPMARPSMRQVVQYLERDIPLPDLSLLSLSSSGLTFGYQEFFEDFPMSYPSTMDKTMSHTSVSIADSLL 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme176234g00001 129 PANTHER - 1 80 - -
Trme176234g00001 129 SUPERFAMILY Protein kinase-like (PK-like) 1 85 IPR011009 -
Trme176234g00001 129 Gene3D Transferase(Phosphotransferase) domain 1 1 87 - -
Trme176234g00001 129 ProSiteProfiles Protein kinase domain profile. 1 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme176234g00001 129 Pfam Protein tyrosine and serine/threonine kinase 3 48 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme176234g00001 Trme-Chr176234 1 485 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme176234g00001 1 129 Receptor kinase-like Gene Family AT2G37710 47.853 2.37e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trme176234g00001 PK_Tyr_Ser-Thr 2.6e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme176234g00001 - - gmx:100802293 155.221