Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17607g00001 ATGGCAAGAGAGATACTTGTTTTGAGGAAACTTGATCATCCAAATGTTTTAAAGCTTGAAGGATTGGTTACTTCTAGAATGTCATGTAGTCTTTATTTGGTATTTGAGTATATGGTACATGATCTTGCAGGGCTTTCAGCTAGTCAAGGTGTTAAGTTTACTGAACCTCAGGTCAAATGCTTTATGAAGCAATTACTTTCCGGTCTTGAGCATTGCCACAGTCGAGGCGTATTGCACCGTGATATCAAGGGTTCCAATCTGCTTATTGACAATGAAGGAATCCTAAAAATTGCAGATTTTGGACTGGCAACTTTCTATAATCCTAATAAAAAACAGTGCATGACAAGCAGAGTTGTGACACTTTGGTATCGACCCCCTGAGCTTCTTCTTGGGGCTACATTTTATGGTGTAGGTATTGATCTTTGGAGTGCTGGTTGTATTTTGGCAGAGCTGCTTGCTGGGAAGCCAATCATGCCTGGCCGAACAGAG 489 0.411 MAREILVLRKLDHPNVLKLEGLVTSRMSCSLYLVFEYMVHDLAGLSASQGVKFTEPQVKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLATFYNPNKKQCMTSRVVTLWYRPPELLLGATFYGVGIDLWSAGCILAELLAGKPIMPGRTE 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17607g00001 163 SMART serkin_6 1 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme17607g00001 163 FunFam Mitogen-activated protein kinase 38 163 - -
Trme17607g00001 163 PANTHER CELL DIVISION PROTEIN KINASE 2 163 - -
Trme17607g00001 163 Gene3D Phosphorylase Kinase; domain 1 1 37 - -
Trme17607g00001 163 SUPERFAMILY Protein kinase-like (PK-like) 2 162 IPR011009 -
Trme17607g00001 163 Pfam Protein kinase domain 2 160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme17607g00001 163 FunFam Putative serine threonine-protein kinase 1 44 - -
Trme17607g00001 163 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
Trme17607g00001 163 Gene3D Transferase(Phosphotransferase) domain 1 40 163 - -
Trme17607g00001 163 ProSiteProfiles Protein kinase domain profile. 1 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17607g00001 Trme-Chr17607 38 1298 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17607g00001 3 163 Core Cell Cycle Gene Families AT5G64960 59.429 1.36e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trme17607g00001 Pkinase 2.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17607g00001 K08819 - gmx:100793033 312.383