Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17573g00001 ATGACCTCAGCAATAGCAATTGAAGATGTTCGTAGGGAGGTGAAGCTATTGAAAGCTCTGTCGGGCCATAAGCATCTTATCAAATTTCACGATGCTTGTGAGGATGCCAATAATGTGTACATAGTTATGGAGGGAGGAAGGTATACCGAAGAGGATGCAAAGGTTATTGTTTTGCAGATTCTAAGTGTAGCTGCCTTTTGTCATCTTCAAGGTGTTGTGCATCGTGACTTGAAACCCGAG 240 0.4292 MTSAIAIEDVRREVKLLKALSGHKHLIKFHDACEDANNVYIVMEGGRYTEEDAKVIVLQILSVAAFCHLQGVVHRDLKPE 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17573g00001 80 Gene3D Phosphorylase Kinase; domain 1 1 41 - -
Trme17573g00001 80 Pfam Protein kinase domain 8 80 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme17573g00001 80 SUPERFAMILY Protein kinase-like (PK-like) 6 80 IPR011009 -
Trme17573g00001 80 ProSiteProfiles Protein kinase domain profile. 1 80 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme17573g00001 80 Gene3D Transferase(Phosphotransferase) domain 1 42 80 - -
Trme17573g00001 80 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17573g00001 Trme-Chr17573 147 951 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17573g00001 1 80 EF-hand Containing Proteins AT2G46700 71.277 1.70e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme17573g00001 Pkinase 2.4e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17573g00001 K13412 - ncol:116260487 144.821