Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme175711g00001 ATGACTGCAGCTAGGGGAACATTAGGATACATGGCACCTGAAGTTTTTTCTAGAAATTTTGGAAATGTCTCTTACAAGTCTGATATATACAGCTACGGTATGTTACTGCTGGAGATGGTTGGAGGAAGAAAGAATACTAAAACAGTCGTTAATGGTGAGGAAAATTTCGAAGTTTTGTATCCAGATTGGATCCACAGTTTGCTTGAAGGGGGAGACATACATATCCCAATTGACGAAGAGGGTGATTTTAGAATTGCAAAGAAACTAGCAATTGTGGGACTTTGGTGCATTCAATGGCACTCAATGCATCGACCATCCATGAAAACTGTGATGCAGATGCTACAAGGAGAGGGAGACAAGTTAAAAGTTCCCGACAATCCTTTCAATGCTTCATCTTCAAGTAATAGAACTGCAAATACTGCTACAGG 428 0.4019 MTAARGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTKTVVNGEENFEVLYPDWIHSLLEGGDIHIPIDEEGDFRIAKKLAIVGLWCIQWHSMHRPSMKTVMQMLQGEGDKLKVPDNPFNASSSSNRTANTATG 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme175711g00001 143 ProSiteProfiles Protein kinase domain profile. 1 129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme175711g00001 143 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 133 IPR045874 GO:0004672
Trme175711g00001 143 Pfam Protein kinase domain 2 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme175711g00001 143 MobiDBLite consensus disorder prediction 122 143 - -
Trme175711g00001 143 MobiDBLite consensus disorder prediction 126 143 - -
Trme175711g00001 143 SUPERFAMILY Protein kinase-like (PK-like) 2 114 IPR011009 -
Trme175711g00001 143 Gene3D Transferase(Phosphotransferase) domain 1 1 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme175711g00001 Trme-Chr175711 59 486 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme175711g00001 1 128 Receptor kinase-like Gene Family AT5G38280 46.269 3.50e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme175711g00001 Pkinase 1.8e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme175711g00001 - - tpra:123893308 250.751