Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme175697g00001 ATGTTTCCATCCACATTGTCTTTTTCTGTAGGTCATTTGACCAAAAAGAGCGATGTGTATAGCTTCGGTGTTGTGCTCCTTGAAATTATGTCCGGCAAACGAGCACTAGACACCAACAGACCATCTGGGGAACACAATTTAATTGAATGGGCCAAACCTTACCTCAACAGCAAACGCCGGATCTTCCAAGTTATGGACGCTCGAATTGAAGGCCAATACTCGTTGCGTCAAGCAGTGAAAGCAGCTAACCTCGCGGTTCAATGTTTGTCCGTTGAACCAAGATTTAGACCGAAAATGGACGAGGTTGTAAGAGCATTGGAGGAACTTCAGGGTTCCTCAGATGACCTGACCGGAAGAGTAGGAAGCTCTCGAGATCAAAATATTAGGAGTGTTCCTAGCTCGAGGAGTAATGGT 414 0.4565 MFPSTLSFSVGHLTKKSDVYSFGVVLLEIMSGKRALDTNRPSGEHNLIEWAKPYLNSKRRIFQVMDARIEGQYSLRQAVKAANLAVQCLSVEPRFRPKMDEVVRALEELQGSSDDLTGRVGSSRDQNIRSVPSSRSNG 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme175697g00001 138 MobiDBLite consensus disorder prediction 115 138 - -
Trme175697g00001 138 Pfam Protein tyrosine and serine/threonine kinase 10 106 IPR001245 GO:0004672|GO:0006468
Trme175697g00001 138 ProSiteProfiles Protein kinase domain profile. 1 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme175697g00001 138 PANTHER OS01G0588500 PROTEIN-RELATED 9 110 - -
Trme175697g00001 138 MobiDBLite consensus disorder prediction 113 138 - -
Trme175697g00001 138 SUPERFAMILY Protein kinase-like (PK-like) 11 107 IPR011009 -
Trme175697g00001 138 Gene3D Transferase(Phosphotransferase) domain 1 3 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme175697g00001 Trme-Chr175697 1 414 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme175697g00001 11 109 Receptor kinase-like Gene Family AT3G58690 45.455 4.24e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme175697g00001 PK_Tyr_Ser-Thr 1.4e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme175697g00001 - - gmx:100775335 206.453